Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq48864 183 3e-41 seq75 98.7 1e-15 >seq48864 Length=438413 Score = 183 bits (202), Expect = 3e-41 Identities = 304/435 (70%), Gaps = 3/435 (1%) Strand=Plus/Plus Query 93107 TGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||||| || |||| || || ||| |||||| ||||| | ||| || | ||||| Sbjct 420045 TGTAAACTCTCATCTC-TGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCATCAGTCT 420103 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 ||||| ||||||||| ||||| | ||||| |||| ||| || || ||||| || || Sbjct 420104 TCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTCTACTGC 420163 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA-TCCATTTTAAAG 93284 |||||| || ||| |||||| || | | || || | | | |||| || | Sbjct 420164 TGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAACGCAAGG 420223 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| || | ||||| | |||||| | ||||| || || | || || | || | Sbjct 420224 CCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAAATTCCC 420283 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 || | |||||| ||||| || || || | | | ||||||||||||| | | | Sbjct 420284 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAGGTATGT 420343 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 | ||||| ||||||||||| || || ||||| | ||||| || || | |||||||| Sbjct 420344 TTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTCAACTTCTTGGC 420403 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 ||||| ||| || || |||||||| || || ||||| ||||| |||| ||||||| | Sbjct 420404 TAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAGCCAGAA 420463 Query 93525 TATGCTTTATAAAAT 93539 ||| ||| |||| Sbjct 420464 CATGGGATATGAAAT 420478 Score = 179 bits (198), Expect = 4e-40 Identities = 303/435 (70%), Gaps = 3/435 (1%) Strand=Plus/Plus Query 93107 TGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||||| || |||| || || ||| |||||| ||||| | ||| || | ||||| Sbjct 415122 TGTAAACTCTCATCTC-TGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCATCAGTCT 415180 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 ||||| ||||||||| ||||| | ||||| ||| ||| || || ||||| || || Sbjct 415181 TCGTTCCTTGAGCCAGAATATCTATGCAAACGAGACAGTAAAGAAGATTCCTTCTACTGC 415240 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA-TCCATTTTAAAG 93284 |||||| || ||| |||||| || | | || || | | | |||| || | Sbjct 415241 TGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAACGCAAGG 415300 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| || | ||||| | |||||| | ||||| || || | || || | || | Sbjct 415301 CCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAAATTCCC 415360 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 || | |||||| ||||| || || || | | | ||||||||||||| | | | Sbjct 415361 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAGGTATGT 415420 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 | ||||| ||||||||||| || || ||||| | ||||| || || | |||||||| Sbjct 415421 TTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTCAACTTCTTGGC 415480 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 ||||| ||| || || |||||||| || || ||||| ||||| |||| ||||||| | Sbjct 415481 TAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAGCCAGAA 415540 Query 93525 TATGCTTTATAAAAT 93539 ||| ||| |||| Sbjct 415541 CATGGGATATGAAAT 415555 >seq75 Length=11204613 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| |||||||| ||||| ||| Sbjct 8448249 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAACGAGCCA 8448308 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || ||||| || |||||||| || |||| |||||| Sbjct 8448309 GAAAAGAAGATTCCTTCTACTGCTGCAAAGGCTACAACACGTTC 8448352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 8452276 GAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 8452335 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| | Sbjct 8452336 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTTATCTGAACTTCTTGGCTAAATCGC 8452395 Query 93473 TCTAC 93477 || || Sbjct 8452396 TCCAC 8452400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556507541430000