Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq436 107 2e-18 seq598 98.7 8e-16 seq338 96.9 3e-15 seq472 91.5 1e-13 seq300 91.5 1e-13 seq347 89.7 4e-13 seq432 87.8 2e-12 seq46174 86.0 5e-12 seq5 86.0 5e-12 seq47707 82.4 6e-11 seq44605 82.4 6e-11 seq108 82.4 6e-11 >seq436 Length=2687165 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| ||||||||||| || | ||| || |||||| || || || || Sbjct 806623 GTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 806682 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 806683 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 806742 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || || | ||| | || ||||| || ||||| Sbjct 806743 ACATTCTCAATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTC 806802 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 806803 TTCACAAAGATCTGCAT 806819 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| ||||||||||| || | ||| || |||||| || || || || Sbjct 806395 GTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 806454 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| || || ||||| ||||||||||| || ||||| || Sbjct 806455 GCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 806514 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||||||||| || Sbjct 806515 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 806574 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 806575 TTCACGAAGATCTGCAT 806591 >seq598 Length=3788045 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| |||||||| || | ||| | ||| ||||| ||||| |||||| | || || | Sbjct 1806245 CCACGAAGTCTCAACACAAGATGAAGCGTGGATTCCTTTTGGATGTTGCAGTCAGACAGA 1806304 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 |||| |||||| | || || |||| | || || | || ||||| |||||||| Sbjct 1806305 GTACTCCCATCTTCCAACTGCTTGCCAGAAAAAATCAGTCTTTGCTGGTCAGGAGGAATT 1806364 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || || ||| || ||||| | ||| || || | | ||| || || Sbjct 1806365 CCTTCCTTATCCTGAATTTTGGCTTTTACATTTTCTGTTGTATCTGATGGTTCAACCTCG 1806424 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| | || || || | ||| |||||||||||||||||||| Sbjct 1806425 AGGGTGATAGTCTTCCCTGGCAGGGTTTTTACAAAAATCTGCAT 1806468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| | | ||| | || ||||| ||||| |||||||| || Sbjct 3751609 ACCACCAGGAAGTCTCAACAGAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGA 3751550 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| || ||||| ||||| | || || | || || || ||||| Sbjct 3751549 CAGAGTACACCCATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 3751490 Query 114275 AATGCC-TTCTTTGTCGGCAATCTTTTG--TTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||| || ||||| | | | ||||| ||||| | ||| | || || | | ||| Sbjct 3751489 AATTCCCTTCTTCTCCTGGA---TTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTC 3751433 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || |||||||| ||||||||||| Sbjct 3751432 AACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 3751382 >seq338 Length=5205875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | | | || || ||||| |||||||| || Sbjct 2398017 ACCACCATGGAGTCTCAACACAAGATGAAGCATGGACTCCTTTTGGATGTTGTAGTCAGA 2398076 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | ||||| ||||| | || || | || || || ||||| Sbjct 2398077 CAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 2398136 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || || | | ||| || Sbjct 2398137 AATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAAC 2398196 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || |||||||| ||||||||||| Sbjct 2398197 CTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2398244 >seq472 Length=1492349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||| || || ||||| |||||||| || Sbjct 1223285 ACCACCACGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 1223226 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||||| | ||||| ||||| | || || | || || || | ||| Sbjct 1223225 CAAAGTACGCCCGTCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAAGG 1223166 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| || || || || ||||| | ||| | || || | | ||| || Sbjct 1223165 AATTTCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAAC 1223106 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || |||||||| ||||||||||| Sbjct 1223105 CTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 1223058 >seq300 Length=5427623 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 || ||||| |||||||| || | ||| | |||||| || ||| | ||||||| | | Sbjct 4603808 ACTGCCACAAAGTCTCAACACGAGATGAAGCGTAGAATCCTTTAGGATGTTGT----GGT 4603863 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||||| |||||| ||||| || | || | || || || |||| Sbjct 4603864 CAAAGTACACCCATCTTCAAATTGTTTGCCAGCAAAGCTCAGTCTTTGCTGACCCAGAGG 4603923 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || ||| ||||| || | | ||| || || | | ||| || Sbjct 4603924 AATTCCTTCCTTATCGTAGATCTTGGCCTTAACATTTTCTGTTGTATCCGAAGTTTCAAC 4603983 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| || || || || || || ||||||| ||||||||||| Sbjct 4603984 CTCGAGGGTAACAGTCTTCCCCGTAAGGATTTTTACGAAAATCTGCAT 4604031 >seq347 Length=5549683 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || ||||| || | ||| | ||| || || ||||| |||||||| || Sbjct 1107942 ACCACCACGAAGCCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 1107883 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| | || || ||||| | || || | || || || ||||| Sbjct 1107882 CAGAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1107823 Query 114275 AATGCCTT-CTTTGTCGGCAATCTTTTG--TTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||| |||| ||| | | | ||||| ||||| | ||| | || || | | ||| Sbjct 1107822 AATTCCTTTCTTACCCTGGA---TTTTGGCTTTTACATTTTCTATTGTATCCGAAGGTTC 1107766 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || |||||||||||||||||||| Sbjct 1107765 AACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCAT 1107715 >seq432 Length=6714211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | | || || ||||| |||||||| || Sbjct 4307066 ACCACCACGAAGTCTCAACACAAGATGAAGCCCGGACTCCTTTTGGATGTTGTAGTCAGA 4307125 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | ||||| ||||| | || || | || || || ||||| Sbjct 4307126 CAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 4307185 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || || | ||| || Sbjct 4307186 AATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGATCGTTCAAC 4307245 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| || || || || || || |||||| ||||||||||| Sbjct 4307246 CTCGAGGGTGACGGTCTTCCCTGTGAGGATTTTTATGAAAATCTGCAT 4307293 >seq46174 Length=2177 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||| || || ||||| |||||||| || Sbjct 1954 ACCACCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 1895 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | ||||| ||||| | || || | || || || ||||| Sbjct 1894 CAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1835 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || || || || ||||| | ||| | || || | | ||| || Sbjct 1834 ----CCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGACGGTTCAAC 1779 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||||| ||||||||||| Sbjct 1778 CTCGAGGGTAATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1731 >seq5 Length=157846 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||| || || ||||| |||||||| || Sbjct 1273 ACCACCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 1214 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | ||||| ||||| | || || | || || || ||||| Sbjct 1213 CAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1154 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || || || || ||||| | ||| | || || | | ||| || Sbjct 1153 ----CCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGACGGTTCAAC 1098 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||||| ||||||||||| Sbjct 1097 CTCGAGGGTAATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1050 >seq47707 Length=6282480 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | ||| || || ||||| ||||||||||| Sbjct 1043821 ACCACCAGGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 1043762 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | || || |||| | || || | || || || ||||| Sbjct 1043761 CAAAGTACGCCCATCTTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1043702 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || | | ||| || Sbjct 1043701 AATTCCTTCCTTATCCTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAAC 1043642 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||||| ||||||||||| Sbjct 1043641 CTCAAGGGTGATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1043594 >seq44605 Length=175201 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||| || || | ||| ||||| || |||||||| |||||||| || Sbjct 1684 ACCACCACGAAGTCTTAACACAAGATGAATCGTGGACTCTTTTTGGATGTTGTAGTC--- 1740 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| | |||| ||||| | || || | || || || ||||| Sbjct 1741 -AAAGTACGCCCATCTTCCAACTGTTAGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1799 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || || | || || Sbjct 1800 AATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGCTCAAC 1859 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || | || ||||||| ||||||||||| Sbjct 1860 CTCGAGGGTGATGGTCTTCCCTGGGAGGGTTTTTATGAAAATCTGCAT 1907 >seq108 Length=8981738 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || ||||| |||||||| || Sbjct 3100045 ACCACCACGAAGTCTCAACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTC--- 3100101 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||| | |||||| | || || ||||| |||| || | || || || ||||| Sbjct 3100102 -AGAGTATGCCCATCTTCCAACTGGTTGCCAGCACAGATCAGTCTTTGCTGATCAGGAGG 3100160 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || || | | || || Sbjct 3100161 AATTCCTTCCTTATCTTGGATTTTGACTTTTACATTTTCTATTGTATCCGACGGTTTAAC 3100220 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||||| ||||||||||| Sbjct 3100221 CTCAAGGGTGATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 3100268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419874540309000