Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq598 120 3e-22 seq388 118 9e-22 >seq598 Length=3788045 Score = 120 bits (132), Expect = 3e-22 Identities = 268/401 (67%), Gaps = 15/401 (4%) Strand=Plus/Plus Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 ||||||| |||||||| || || | ||| || || || ||||| | || | || ||| Sbjct 455354 ATGTGGG--TCTCCCAAAGTATGTACAAAGTCACCTGGCCTAAGGTCTGTGATGTGTGCA 455411 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | |||||| || | ||| ||||||||||||||| ||||| |||| ||| |||| Sbjct 455412 ATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAAAGGCGTGCCCAGGACCACGTCT 455471 Query 20315 CCCGACC-----------TCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAA 20363 ||||||| || |||| ||||| ||||| ||||| ||||| | || | | Sbjct 455472 CCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGACAGCTCGCCGTCCACCACGCAGA 455531 Query 20364 ATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACG 20423 | || || | | ||| | || || ||||||||| | | | || ||||| | Sbjct 455532 ACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGAGGGAGAGCTTTTGGATTCCAAG 455591 Query 20424 CACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCA-CAATGTACGAC 20482 |||| | |||| |||||| |||| ||||| ||| || || | || | | | | Sbjct 455592 CACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTGATAGTGTCAATCACTTTTTG-C 455650 Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAG 20542 | |||||| | || || | |||||| | || | | ||| | |||||||| Sbjct 455651 AGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATATTTTTGTATTCTGCCCCAAAA 455710 Query 20543 TGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 || ||||||||||| || |||||||| ||||| || || || Sbjct 455711 TGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCTTC 455751 >seq388 Length=3990105 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294 |||| || || | || |||| |||||| || | |||| ||||||||||||||| || | Sbjct 2997474 TAAGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGG 2997415 Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354 | || |||| ||||||||||| |||||||| || ||||| ||||| |||||||| || Sbjct 2997414 GCACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCA 2997355 Query 20355 CTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 | || || || || || | | || || || || |||||||||| Sbjct 2997354 CCACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCA 2997310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441092804130000