Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq721 118 1e-21 >seq721 Length=8920270 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| ||||||| |||||||| || ||||||||||| || | Sbjct 5232619 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 5232560 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| |||||||| ||||| ||| || | ||| || || || || ||| |||| |||| Sbjct 5232559 TGCCCCAGGCTGAGAACCACAGCCCAGACGTCAAGGAGCACGTGAACTCTCTGGGGGAAA 5232500 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008 | || ||||| || || | || ||||| Sbjct 5232499 AGCTGAAGACGCTCAGGTTGCGGCTGCG 5232472 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||||||||||||||| |||||||| || || ||||||| Sbjct 5230284 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5230225 Query 10140 TAGAAGCATACATGACAA 10157 ||||||| |||||||||| Sbjct 5230224 TAGAAGCCTACATGACAA 5230207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552366170280000