Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq309 113 5e-20 seq460 104 3e-17 seq490 93.3 5e-14 seq104 93.3 5e-14 seq40807 91.5 2e-13 seq40042 91.5 2e-13 seq398 91.5 2e-13 seq42965 89.7 6e-13 seq502 89.7 6e-13 seq50 84.2 2e-11 seq741 82.4 8e-11 seq86 82.4 8e-11 >seq309 Length=2273895 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | | ||| ||||| ||||| ||| ||| || || || ||||| |||| | Sbjct 961387 CCACCTCCCAGATGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 961328 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| || || || ||||| || ||||||||||||| ||| Sbjct 961327 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCGGATGGG 961268 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || |||||| |||||| | | || | | || || || | || | Sbjct 961267 ATGCCCTACTTGTCTTGGATTTTGGCCGTCACATTCTCTATGGTATCCCTGGGCTCAGCC 961208 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| |||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 961207 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 961158 >seq460 Length=2238155 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | || || ||||| ||||| ||| ||| | || || ||||| |||| Sbjct 439795 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 439736 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||| || || || ||||| || ||||||||||||| || Sbjct 439735 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCGGGTGAG 439676 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| | |||| |||| || | | ||||| || | || || Sbjct 439675 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 439616 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| |||||||| ||||| || || ||||| | ||||| ||||| || Sbjct 439615 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTT 439566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | | ||| ||||| ||||| ||| ||| || || ||||| |||| Sbjct 439074 CCGCCTCGCAGATGCAGCACCAGATGCAGGGTGGACTC----TGGATGTTGTATTCAGAG 439019 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||| || || || ||||| | ||||||||||||| || Sbjct 439018 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAAGCGCTGCTGGTCGGGTGAG 438959 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| | |||| |||| || | | ||||| || | || || Sbjct 438958 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 438899 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| |||||||| ||||| || || ||||| | ||||| ||||| || Sbjct 438898 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTT 438849 >seq490 Length=542777 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || || | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 29873 TCTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 29814 Query 57066 ATACTACCGAGGAT 57079 |||||| |||||| Sbjct 29813 ATACTAATGAGGAT 29800 >seq104 Length=6237175 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 31630 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 31571 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 31570 ATACTAACGAGGAT 31557 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 48325 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 48266 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 48265 TACTAACGAGGA 48254 >seq40807 Length=1500189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 927275 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 927216 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 927215 TACTAACGAGGAT 927203 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 930383 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 930324 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 930323 TACTAACGAGGA 930312 >seq40042 Length=288415 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 97074 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97015 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 97014 TACTAACGAGGAT 97002 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 118490 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 118431 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 118430 TACTAACGAGGAT 118418 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3868 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3927 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3928 TACTAACGAGGA 3939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 81258 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 81199 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 81198 ATACTAACGAGGAT 81185 >seq398 Length=3125954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 189009 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 188950 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 188949 ATACTAACGAGGA 188937 >seq42965 Length=562198 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 314168 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 314227 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 314228 TACTAACGAGGA 314239 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 317334 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 317393 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 317394 TACTAACGAGGA 317405 >seq502 Length=8891789 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8082411 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8082352 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 8082351 TACTAACGAGGA 8082340 >seq50 Length=2506936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41985 CCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGA 42044 |||| | ||||| ||||| || | ||| ||| || || || ||||| |||| ||| Sbjct 1731579 CCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGC 1731520 Query 42045 GTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACG 42104 || || | || || ||||| || || || ||||| || ||||||||||| | || | | Sbjct 1731519 GTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGGGGGATG 1731460 Query 42105 CTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCG 42164 | || |||||| |||||| |||| || | | || || || | || || ||| Sbjct 1731459 CCCTTCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCGACCTCG 1731400 Query 42165 ACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 42205 | | ||| | |||||||| || ||||| | ||||| || Sbjct 1731399 AGGGAGATTTTCTTGCCCGTCAGGGTCTTCATGAAGATCTG 1731359 >seq741 Length=3422296 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||| ||||| |||||||||| |||||||||| |||||||||||||||||| ||||||| Sbjct 1087111 AATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTATACTAACGAGGAT 1087170 >seq86 Length=11366711 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1785308 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1785249 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1785248 ATACTAACGAGGA 1785236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542868199380000