Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_011054.1 Length=58037 Score E Sequences producing significant alignments: (Bits) Value seq49917 782 0.0 seq50663 497 4e-136 seq38559 309 1e-79 seq43497 82.4 3e-11 >seq49917 Length=2087 Score = 782 bits (866), Expect = 0.0 Identities = 927/1251 (74%), Gaps = 9/1251 (1%) Strand=Plus/Plus Query 14870 CCCCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACC 14929 || || |||| |||||||||||||| || || ||||||| ||| | |||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 14930 GCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCA 14989 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 14990 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAAATACTACGTGATTTGG 15049 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15050 CCGTCGTGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGCGGTGTTCGTGTGGGCG 15109 ||| |||||||||| || || || ||||| | |||||||| | ||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15110 TTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15169 | | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15170 CTGGAGTTCATCAACAACGGCTTGTCGTT-----GAACCCGGATGTGCGGGCATGGTTCG 15224 ||||||||| ||||||||| | |||| | |||| || | ||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15225 GCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACCCGCATGC 15284 |||| | ||||| || | ||| || | | ||||||||| | || | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15285 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCGATGGTCG 15344 |||| ||||| |||||| |||||||| ||||| ||||||| ||||| ||| || Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15345 CGCGGACAGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAAGATGTGACCCAGTCGTAC 15403 | ||| || || ||||||||| | | | || ||||||| ||||| |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15404 GGTGTGGATACGCGCATGGATTTGTGGCTGCCGGGTGATCCGCAGCCTGACCGGTGGGCG 15463 |||||||| || |||||||| |||||| |||||||| ||||| || ||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15464 AACCTGGACCAGCCTACCTACGTGTTCTCTACAGTGGACCGGTCGCAGATCACTGGCCCG 15523 ||||| || ||| ||||||||||| || || |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15524 ACGAAAACCGTGCTGGATTCGGTGCTGCGCACCACGATTGACTTGGGCGGGTCGCTGGGG 15583 || |||||||| ||||||||| | || ||| ||| | ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15584 GACATCTTCAAACCTGTCATCAAGCAGGTCCCCGGCATGGATGGCGTGTTTTATGCGCCG 15643 ||||||||||| || |||||| ||||||| ||||| ||| | || ||||| || || || Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15644 GCGCTGGGTGTGGATTTTGAGCAGCCGTACGCGTATTTCGTGGCCCCTGAGCCGGGTGAG 15703 ||| ||||| ||||| |||||||| ||||| || |||| ||||| || ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 15704 GACACCGGCATCGATGCA-TGCACGATCACTGACCACACACCCGAGGGTTGGCAGCACAT 15762 ||| || |||| || | ||| ||| | |||||||| |||||||| ||||| ||||| Sbjct 906 GACTCCAACATC-ATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACAT 964 Query 15763 CATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCT 15822 ||| || || ||||| |||||||||||||||||| | |||||||||||||||||| || Sbjct 965 CATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTG 1024 Query 15823 AATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGG 15882 || | |||||||||||||| ||||| ||| ||||||| ||||| |||||| | ||||| Sbjct 1025 GATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGG 1084 Query 15883 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 15942 |||||||||||||||||||||||||||||| || | || ||| | ||| ||||| Sbjct 1085 ATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGA 1144 Query 15943 AGTTGGCCCGTACCACCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16002 || ||||| | || |||||||||||||||||||| ||||| ||| || |||||||| Sbjct 1145 GGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAA 1204 Query 16003 CATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCACAGGGCAAGACGACGGC 16062 ||||||||| ||||||| ||||||||||| | || ||| | || || || ||||| Sbjct 1205 CATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGC 1264 Query 16063 GACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTT 16113 | ||| ||||| ||||||| ||| ||||| || || || ||| |||| Sbjct 1265 GCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 497 bits (550), Expect = 4e-136 Identities = 477/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15602 ATCAAGCAGGTCCCCGGCATGGATGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTT 15661 || ||||| | |||||||||||| || |||||||| |||||| || |||||| | || Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15662 GAGCAGCCGTACGCGTATTTCGTGGCCCCTGAGCCGGGTGAGGACACCGGCATCGATGCA 15721 ||||| || ||||| ||| | || || || || | ||||||||| | |||| | Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 15722 TGCACGATCACTGACCACACACCCGAGGGTTGGCAGCACATCATTGGTGGGCGTTCCCCA 15781 ||| |||||| |||| || ||||||||||||||||||||||| ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 15782 AAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCTAATCGACTCGCTGATGATC 15841 ||||||||||||||| ||||||||||||| ||||| ||| | ||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 15842 GTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGGGTTCCTGAACAACAGCTTC 15901 || ||||| ||| |||| || || || || ||| | || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 15902 CTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGAAGTTGGCCCGTACCACCCG 15961 ||||| |||||| | | || ||||||||||| || |||||||| ||||| |||||||| Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 15962 GCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAACATCGAAACGGTGTTCGCA 16021 ||| ||||||| |||||||| || || ||||| || |||||||||||||| || ||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16022 TTCATCAACGCCTTGTTTGATTCACAGGGCAAGACGACGGCGACGGTGCAGTTCCGTAAC 16081 |||||||||||| | ||||||||||||||| | || || || || |||||| || Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16082 GGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 16140 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16141 CATGTCGCGTACCCGCATGGTGACTGACTACATCGAGAACGTGATGTGGCGGGTTACCCA 16200 || | | || ||| ||||| || ||||||||||||||||| |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16201 GGATGAGCG 16209 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 143 bits (158), Expect = 1e-29 Identities = 202/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 15158 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCTTGTCGTTGAACCCGGATGTGCGGGCA 15217 ||||| |||||| |||| ||| |||||||| | ||||||||||| || | || ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15218 TGGTTCGGCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACC 15277 ||||||||||| | |||| || || || ||||| ||||| | || | || | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15278 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCG 15337 |||||||| || || || |||||| || ||||| ||||| ||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15338 ATGGTCGCGCGGACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAAGATGTGACCCAG 15397 || || ||| || || ||||| |||||| | || ||||| ||||| || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 15398 TCGTACGGTGTGGATACGCGCATGGATTTGTGGCTGCCGGGTGA 15441 | |||||||| ||||| || |||||| |||||| ||| || || Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGCGGCCCGGGGA 1177 Score = 136 bits (150), Expect = 1e-27 Identities = 233/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 14756 TGCGACAAGTTTTGGCAGCCGATGGGCGCGGTTGGTGGCGATCTGATCGAGGCGTCGGGT 14815 |||| |||||| ||| || ||||| | || ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 14816 GCTGACCCGCGCAACGATGTGGAAACCGGCCGGATCGTACTCAAAGGGAACAGTCCCCTC 14875 | || || || || || |||| ||||||| | ||| || | || || ||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 14876 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACCGCGGGT 14935 | | |||||||||||||| || |||||||| || | || ||||||||||| Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 14936 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCATGGACC 14995 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 14996 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAAATACTACGTGATTTGGCCGTCG 15055 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15056 TGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGC 15093 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 309 bits (342), Expect = 1e-79 Identities = 292/370 (79%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 15823 AATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGG 15882 |||||| ||||||||||||| ||||| ||| |||| || || || || ||| | || || Sbjct 388 AATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGG 447 Query 15883 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 15942 ||||||||||||||||||||||| |||||| | || || ||||||||||| || ||||| Sbjct 448 CTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGA 507 Query 15943 AGTTGGCCCGTACCACCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16002 ||| ||||| |||||||| ||| ||||||| |||||||| || || ||||| || ||||| Sbjct 508 AGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAA 567 Query 16003 CATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCACAGGGCAAGACGACGGC 16062 ||||||||| || ||||| |||||||||||| | ||||||||||||||| | || || || Sbjct 568 CATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGC 627 Query 16063 GACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGG 16122 || |||||| || |||| ||| || || ||||| | |||||||| ||||| Sbjct 628 ACAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGG 687 Query 16123 CCTGATGTCGCTGGTGT-TCATGTCGCGTACCCGCATGGTGACTGACTACATCGAGAACG 16181 |||||||| | || | || | | || ||| ||||| || |||||| ||||||||| Sbjct 688 ATTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACG 746 Query 16182 TGATGTGGCG 16191 | |||||||| Sbjct 747 TCATGTGGCG 756 Score = 150 bits (166), Expect = 7e-32 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15434 CCGGGTGATCCGCAGCCTGACCGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTCTCT 15493 || |||||| |||||| || | |||| | ||| || || || || || || || || Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15494 ACAGTGGACCGGTCGCAGATCACTGGCCCGACGAAAACCGTGCTGGATTCGGTGCTGCGC 15553 || || ||||| || ||| ||||| || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15554 ACCACGATTGACTTGGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTC 15613 || | ||| |||| || ||||| || | |||||||| || ||||| ||||| ||| Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15614 CCCGGCATGGATGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTTGAGCAGCCGTAC 15673 ||||||||||| || ||||| || |||||| || |||||| | || ||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15674 GCGTATTTCGTGGCCCCTGAGCCGGGTGAGGAC 15706 || ||| | || || || || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq43497 Length=1050 Score = 82.4 bits (90), Expect = 3e-11 Identities = 181/269 (67%), Gaps = 18/269 (7%) Strand=Plus/Plus Query 17185 GTTTTCGGTTGAGGTTCTTCCGCTGTCATGACGTCATCGTTTGATCCGTTGCCGGAGTGG 17244 ||||| || ||||||||| ||||||| | ||||| | | || || ||| Sbjct 3 GTTTTGGGCTGAGGTTCTGCCGCTGTGA------CATCGGG------GATTCCCGAATGG 50 Query 17245 GCTCATGCGGTGCCGTCTGAGCCGGGTATTCACCCGGAACAGTCGGCGTTGCAGTGGCAG 17304 || || ||| | ||||||| || | | || | ||| ||| | | || || || Sbjct 51 GCGCAGGCGATCCCGTCTGCCCCAG---TCCATCAGGAGCAGCC--CAATGAGCTGACA- 104 Query 17305 CGTCCGTTCACCGTTCAGCAGCTGCTTGAGATTGGTGAGCAGTTCATCGAGCAGTTTTTG 17364 || |||||||| | |||||||| ||||| | ||||| ||| ||||||||||||| || Sbjct 105 CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAGCAGTTCCTG 164 Query 17365 GCGTGGGTGGTGCGCGCGGTCGCTGGGGTGTTCATCCCTGGTGAGGCATCGTTCGACCAG 17424 | | || || | || || | || |||||||| ||||| | |||||||| ||| Sbjct 165 CGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCGTTCGAGCAG 224 Query 17425 TTGCGTGATTGGGCGTTGAACATCCCCAT 17453 || || ||||| | | ||||||||| Sbjct 225 CTGGAGGAATGGGCATACAGCATCCCCAT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185484948928500