Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_011289.1 Length=58578 Score E Sequences producing significant alignments: (Bits) Value seq49917 845 0.0 seq50663 479 1e-130 seq38559 298 2e-76 seq42881 111 6e-20 seq45035 107 7e-19 >seq49917 Length=2087 Score = 845 bits (936), Expect = 0.0 Identities = 940/1250 (75%), Gaps = 7/1250 (1%) Strand=Plus/Plus Query 15084 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAAACC 15143 || || |||| |||||||||||||| || || ||||||| ||| | || ||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15144 GCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCA 15203 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15204 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGG 15263 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15264 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 15323 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15324 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15383 || | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15384 CTGGAGTTCATCAACAACGGCCTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 15438 ||||||||| ||||||||| |||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15439 GCACCGTGCTGCAAGCCCTGTCGCGTGACGGGCTGTCGGTCCAGGCGTTCACCCGCATGC 15498 ||||| | |||||||||| ||| ||| ||| ||||| ||| | ||| | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15499 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTGG 15558 |||| ||||| |||||| |||||||| || | |||||||| ||||| ||| | Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15559 CGCGGACGGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAGGACGTTACCCAGTCGTAC 15617 | ||| || || ||||||||| | | | || |||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15618 GGTGTGGATACCCGCATGGATTTGTGGCTTCCAGGTGATCCGCAGCCTGACAGGTGGGCG 15677 |||||||| ||||||||||| |||||| || ||||| ||||| || |||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15678 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGTCCG 15737 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15738 ACGAAAACCGTGCTGGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 15797 || |||||||| ||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15798 GACATCTTCAAACCTGTCATCAAGCAGGTTCCTGGCATGGACGGCGTGTTTTATGCGCCC 15857 ||||||||||| || |||||| ||||||| || || ||| |||| ||||| || || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15858 GCGTTGGGTGTGGATTTTGAGCAGCCGTACGCCTATTTCGTGGCGCCCGAGCCGGGTGAG 15917 | | ||||| ||||| |||||||| |||||||| |||| || ||||| ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 15918 GACACCGGTATCGATGCGTGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACATC 15977 ||| || ||| ||| ||| | ||||||||||||||||| ||||| |||||| Sbjct 906 GACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATC 965 Query 15978 ATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACCTCATGAATGCTACCTTCGCATGGCTT 16037 || || || ||||| |||||||||||||||||| | |||||||| ||||||||| || Sbjct 966 ATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTGG 1025 Query 16038 ATCGACTCGCTGATGATCGTCGTCGGGTTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16097 || | |||||||||||||| ||||||||| ||||||| ||||| |||||||| ||||| Sbjct 1026 ATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGGA 1085 Query 16098 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 16157 |||||||||||||||||||||||||||||| || | ||| ||| | ||| ||||| Sbjct 1086 TTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGAG 1145 Query 16158 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCTTCGGCACCGTACAAC 16217 || ||||| | ||||||||||||||||||||||| ||||| || || ||||||||| Sbjct 1146 GTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAAC 1205 Query 16218 ATCGAAACGGTGTTCGCGTTCATCAACGCTTTGTTTGATTCGCAGGGCAAGACGACGGCG 16277 |||||||| ||||||||||||||||||| | || ||| | || || || |||||| Sbjct 1206 ATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGCG 1265 Query 16278 ACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGTCGTGACGTTTT 16327 ||| ||||| ||||||| ||| ||||| || || || ||| |||| Sbjct 1266 CAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 479 bits (530), Expect = 1e-130 Identities = 473/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15816 ATCAAGCAGGTTCCTGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTT 15875 || ||||| | || ||||||||||| |||||||| ||||| | |||||| | || Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15876 GAGCAGCCGTACGCCTATTTCGTGGCGCCCGAGCCGGGTGAGGACACCGGTATCGATGCG 15935 ||||| || ||||||||| | || ||||| || | ||||||||| | ||| || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 15936 TGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACATCATTGGTGGGCGTTCCCCA 15995 ||| |||||| |||| |||||||||||||||||||||||||| ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 15996 AAGTGGTTGAACGACCTCATGAATGCTACCTTCGCATGGCTTATCGACTCGCTGATGATC 16055 ||||||||||||||| | |||||||| || ||||| ||| | ||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16056 GTCGTCGGGTTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 16115 || ||||||||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16116 CTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 16175 ||||| |||||| | | ||||| |||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16176 GCGATCGAGCGGTTCTATCCGACAGCTTCGGCACCGTACAACATCGAAACGGTGTTCGCG 16235 ||| ||||||| |||||||| || || || || || |||||||||||||| || |||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16236 TTCATCAACGCTTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGTAAC 16295 ||||||||||| | |||||||| |||||| | || || || || |||||| || Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16296 GGTGCCCAGTATGCGTTGGGTCGTGACGTTTTTCGCGGCGGTCTGATGTCGTTGGTGT-T 16354 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16355 CATGTCACGTACCCGCATGGTGACTGACTACATCGAGAATGTGATGTGGCGGGTTACCCA 16414 || | | || ||| ||||| || |||||||||||||| || |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16415 GGATGAGCG 16423 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 174 bits (192), Expect = 6e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 15372 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCCTGTCGTTAAACCCGGATATCCGGGCA 15431 ||||| |||||| |||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15432 TGGTTCGGCACCGTGCTGCAAGCCCTGTCGCGTGACGGGCTGTCGGTCCAGGCGTTCACC 15491 |||||||||||| | |||||||||||| || || || |||||| | || | ||| | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15492 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 15551 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15552 ATGGTGGCGCGGACGGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCAG 15611 || || ||| || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 15612 TCGTACGGTGTGGATACCCGCATGGATTTGTGGC 15645 | |||||||| |||||||| |||||| |||||| Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 141 bits (156), Expect = 3e-29 Identities = 234/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 14970 TGCGACAAGTTTTGGCAGCCGATGGGCGCTGTCGGTGGCGACCTGATCGAGGCGTCGGGT 15029 |||| |||||| ||| || ||||| |||| ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15030 GCTAACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAAGGGAACAGCCCTCTC 15089 | | || || || || |||| ||||||| | ||| || | ||||||||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15090 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAAACCGCGGGT 15149 | | |||||||||||||| || |||||||| || | || || |||||||| Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15150 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCATGGACC 15209 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15210 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGGCCGTCG 15269 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15270 TGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 15307 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 298 bits (330), Expect = 2e-76 Identities = 289/369 (78%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16038 ATCGACTCGCTGATGATCGTCGTCGGGTTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16097 ||||| ||||||||||||| ||||||||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16098 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 16157 ||||||||||||||||||||||| |||||| | || ||||| |||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16158 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCTTCGGCACCGTACAAC 16217 || ||||| ||||| || ||| ||||||| |||||||| || || || || || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16218 ATCGAAACGGTGTTCGCGTTCATCAACGCTTTGTTTGATTCGCAGGGCAAGACGACGGCG 16277 |||||||| || ||||||||||||||||| | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16278 ACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGTCGTGACGTTTTTCGCGGCGGT 16337 || |||||| || |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16338 CTGATGTCGTTGGTGT-TCATGTCACGTACCCGCATGGTGACTGACTACATCGAGAATGT 16396 |||||||| | || | || | | || ||| ||||| || |||||| ||||||| || Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16397 GATGTGGCG 16405 |||||||| Sbjct 748 CATGTGGCG 756 Score = 141 bits (156), Expect = 3e-29 Identities = 195/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15648 CCAGGTGATCCGCAGCCTGACAGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 15707 || |||||| |||||| || |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15708 ACAGTGGACCGGTCGCAGATCACTGGTCCGACGAAAACCGTGCTGGATTCGGTGCTGCGC 15767 || || ||||| || ||| || || || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15768 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 15827 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15828 CCTGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTTGAGCAGCCGTAC 15887 || ||||||||||| ||||| || ||||| | |||||| | || ||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15888 GCCTATTTCGTGGCGCCCGAGCCGGGTGAGGAC 15920 |||||| | || ||||| || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq42881 Length=1721 Score = 111 bits (122), Expect = 6e-20 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 11485 TGGGGCAGATCGGCGCCCAGCTTGATCAGGATTTCGGTATCTCGAAGGGTTTGGCGGGGA 11544 ||||| |||| |||||| |||| ||| || ||||| ||| ||||| | | || Sbjct 1488 TGGGGGAGATTGGCGCCAAGCTGGATGCCGACTTCGGCGCCTCCAAGGGCCTCGGTGGAC 1547 Query 11545 TCGCGGAGAACATCACGAAGTTCGTGGCGAACCTTGCCGCCGCACCGTTGTTGGGGCAGT 11604 | || ||||| | ||||||||||| ||||| || || ||| ||| || | |||||| Sbjct 1548 TTGCCGAGAATCTAACGAAGTTCGTCGCGAATCTCGCGTTCGCGCCGATGCTTGGGCAGC 1607 Query 11605 TGCAG-GCCATTTCGGCCTATAACCCCACTCAGGGCGGGCACGGTTTGATGGGTGTCCTT 11663 | ||| || || ||| |||||| | ||||||| |||| ||||||| |||| Sbjct 1608 T-CAGCGCTATAAGCGCCGCCAACCCCTCCAAGGGCGGATACGGGATGATGGGCATCCTC 1666 Query 11664 GGGGCGCAGGGTGTGTTCGGTCCGCAGT 11691 |||||||||||||| ||||| ||||||| Sbjct 1667 GGGGCGCAGGGTGTATTCGGGCCGCAGT 1694 >seq45035 Length=256 Score = 107 bits (118), Expect = 7e-19 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 14337 TATGACGGTCCCGGCGCGGATGAGTATGTGGAGTTTGGTCCGCTGCTGCCCAATCAGATT 14396 || ||||| |||||| |||| | ||||| || || || |||||||| ||||||||| | Sbjct 59 TACGACGGGCCCGGCTCGGACCAATATGTCGAATTCGGGCCGCTGCTACCCAATCAGGTG 118 Query 14397 GTGTTCCTACGTACCGACCCGCGCTCACAGACGACGTTGGTGCAGGATTTGACGTCGGTG 14456 ||||| | || ||||| |||||| || || || |||||| | || | || |||||| Sbjct 119 GTGTTTTTGCGCACCGATCCGCGCGTGCACACCACCTTGGTGAAAGACCTAACCTCGGTG 178 Query 14457 CCGCCGTCGCCGCAGGAGTTGAACATTTTCCAGCAGGCG 14495 ||||| || |||||||| | | | |||||| ||||| Sbjct 179 CCGCCCTCACCGCAGGAACTCGATTTGTTCCAGGAGGCG 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187215105610000