Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_011291.1 Length=47057 Score E Sequences producing significant alignments: (Bits) Value seq49917 331 3e-86 seq46136 192 2e-44 seq50663 152 2e-32 seq42881 125 2e-24 seq45817 105 2e-18 seq50019 95.1 4e-15 seq38559 84.2 7e-12 >seq49917 Length=2087 Score = 331 bits (366), Expect = 3e-86 Identities = 739/1104 (67%), Gaps = 9/1104 (1%) Strand=Plus/Plus Query 16843 TACCAAAAGGGCGCGTGGACCAGCACCG-CGAACTGCATCGGCATCTGGGACATCCTGAA 16901 ||| |||||||||||||||| ||| | ||| ||| |||||| |||||||||||||| Sbjct 172 TACGAAAAGGGCGCGTGGACAGGCAATGTCGAGATGCG-CGGCATTTGGGACATCCTGAA 230 Query 16902 CTACCTCACGATCTGGCCGTCGTGGTTCCTGCCGATCCAGATTCAGCCGTTCTCGCACGC 16961 |||| | |||||||||| |||||| || || | ||||| | |||||||| Sbjct 231 CTACTACGTGATCTGGCCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGC 290 Query 16962 GGTGTTCGTCGGGCCGATCGTCACCGTGATCGAGAACATGATCAGCGAGTGCGCCCTGCG 17021 | ||| || || || | ||| | ||||||||| || ||| ||||| ||||| Sbjct 291 AATCTTCATCTGGGCGCTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCG 350 Query 17022 CGTGCAGGCCGGCATCAACGAGTTTCTGAACAACGCGCTGTCACTCAACCCA-----GAC 17076 | | ||| |||| ||||| | |||||||| ||||| ||| || | ||| Sbjct 351 CATCCAGTCCGGGTGGCTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGAC 410 Query 17077 GTACGCGCCTGGTTCGGCTCGATCCTGCAGGCGATCTCGCGCGACGGCCTCAACCCGCGG 17136 | || || ||| | ||| | ||| |||| || || ||||||| ||| || | Sbjct 411 ATCCGGGCATGGATGGGCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAG 470 Query 17137 GCCATCCTCGAGATGCTCAAAACGCCGATGTACGTCGTGCGCACGAACCCGTTCCTCGAC 17196 || || | ||||||| || || | || || |||||| ||||||||||| ||| Sbjct 471 ACCTTCGGCAAGATGCTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGAC 530 Query 17197 GGCTCGCCCCTGGTGGCCAAGACGGTTCGCATGGAGTCGTGCGGCACCACGATCCGCGAC 17256 |||||| || |||||||| ||||||||||| | ||||| || ||| || Sbjct 531 ACATCGCCCATGTGCGCCAAGACCGTTCGCATGGAAACCTGCGGAACGGTCATCAAGGAT 590 Query 17257 CTGACCAAGGCGTACGGCGTCGTCGTTGACGTGACCCTGTGGCGGCCGGGCGACCCGCAG 17316 | ||| || ||||| || | | | || ||||||||| ||||| |||||||| Sbjct 591 GTCACCCGCGCCTACGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAA 650 Query 17317 CCGGATCGGTGGGCAAACCTCACCAAACCGACCTATGTCGTCACGGTCAAGGACCGCAGC 17376 ||||| |||||| |||||| || ||||| || | | | ||||||| Sbjct 651 CCGGACAAGTGGGCCAACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAG 710 Query 17377 CAGATCTCGGGCCCGACGCACACGATCCTCGACTCGGTGTTCCGCACCGCGGTCGACCTC 17436 ||||||||||| || || | || | ||| |||||| || || | | |||||||| Sbjct 711 CAGATCTCGGGGCCCACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTC 770 Query 17437 GGCGGATCGCTCGGCGACATCTTCTACCCGATCATCCGCGAGGTGCAGTCGATGCCGGGC 17496 |||||||| ||||| ||||||||| | || |||||| |||| | ||| || Sbjct 771 GGCGGATCACTCGGTGACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGG 830 Query 17497 GTGTATCACGCCCCCGCGCTCGGCGTGAACTTCACCGAACCCTACGCGGTCGTCGTCGCG 17556 |||| |||||||| |||||| || | ||| | |||||||| ||||||||| Sbjct 831 GTGTTCTACGCCCCCAAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCC 890 Query 17557 CCCGAGCTGGGCGGCGACTCACCGCTGCTGTCGTGCCGGATCACCGACCACACACCGAAG 17616 ||||| ||||| ||||| | | ||| ||| |||||||||| || || Sbjct 891 CCCGAAGAGGGCGAGGACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAG 950 Query 17617 GCGTGGCAAATCCAGATCGGCGGCCGCAGCCCGAAGTGGCTGAACGATTTGATCAACTCG 17676 | |||||| | ||||||||||| || |||||| ||||||| || || || | Sbjct 951 GGCTGGCAACACATCATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCC 1010 Query 17677 ACCCTGGCCTGGCTGATCGACTCGATCTCAATCGTGCTGGGATTCACCGGGATTCCCTCG 17736 ||| | || || ||| | ||| | |||||| | || ||| |||| || || ||| Sbjct 1011 ACCTTCGCAGGGTGGATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCG 1070 Query 17737 AACCTTCTCGACGGGTTCCTCAACGACGCGTTTTTCGCGTTCCAGCTGCTGCAGCACTAC 17796 | || ||| || ||||| ||| || || | ||||||||| || | ||| ||| Sbjct 1071 GATCTGCTCTCGGGATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTAC 1130 Query 17797 CAGCGCCGCGCGCAAATGGGCCCGATGCACCCGAACATCGAGGTGATGATCCCGA-CGCC 17855 ||| ||||| | ||||||| | || ||| |||||| | | ||||| |||| Sbjct 1131 CAGGTCCGCGACGAGGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCC 1190 Query 17856 GTCGCCGCCGTACAACGTCGAGGCGATCTTCACGTTCCTCACCGCGCTGTTCGACACCCG 17915 |||| ||||||||| |||| | || ||| ||||| ||| |||| | ||||| ||| Sbjct 1191 AGCGCC-CCGTACAACATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCA 1249 Query 17916 CGGCTACACCTCGGCGCAAGCCAC 17939 || ||| ||||||| | ||| Sbjct 1250 AGGTGCTACCACGGCGCAGGTCAC 1273 >seq46136 Length=4795 Score = 192 bits (212), Expect = 2e-44 Identities = 292/409 (71%), Gaps = 15/409 (4%) Strand=Plus/Minus Query 10161 TACGTGAAGTTCCTCAAGGCCGGCCACGTGCCCGGCCAGATCAGCAC-CACGTGGCAGGT 10219 |||| ||||||||| |||||| || ||||| |||||| || ||| ||| |||| Sbjct 2756 TACGCCAAGTTCCTCGCTGCCGGCGGTGTTCCCGGTCAGATCGATACGCAC-TGGAAGGT 2698 Query 10220 GATGGCCAAACAGCTGGAGGACCGCCGCCGCCGG--GACTCCAAAAGTTCTTGAAGCACT 10277 |||| ||||||||||| || | | | |||||||||||| |||| ||| | Sbjct 2697 GATGCAGCGCCAGCTGGAGGAGCG--GACAAAGATCGACTCCAAAAGTAATTGAGGCAGT 2640 Query 10278 GGCGCTGTGGTGCCGCTACCCCGATGAGATTGAGGCCGATCTGCGGCTGCACTGCAACGG 10337 |||||||||||||| | ||| ||| ||| ||||||||||| || | | | | | Sbjct 2639 AGCGCTGTGGTGCCGTTGGCCCAATGCGATCGAGGCCGATCTTCGTTTTCGCGGTGTGCG 2580 Query 10338 CACCGACATCCGGTGGTGGCACCGCGGCGACCGCGACGAGCACGGCTGCCTGAAGTTGTC 10397 || || | | | ||||||| ||| |||||| |||| |||| |||| | | || Sbjct 2579 CATCG----CTGAT--TGGCACCAGGGCACCCGCGATGAGCGCGGCGCCCTGGTGCTTTC 2526 Query 10398 GAGCAGGCTGCTGCTGAACCTGGTTCGCAGCCTGCCCGCCAAGTCCGAGTTCAAAACTAA 10457 ||| | | || ||| ||| | | | ||||||| | || ||||||||||| | Sbjct 2525 CAGCCGCCAACTACTGTCGCTGATCCACCAGCTGCCCGAAGACTCAGAGTTCAAAACCCA 2466 Query 10458 CGCCCCGCCGCCGTTTGGCCGCGACGGCGACTGGACCGTCGTCGAGAAGATGCTCGCCTC 10517 || ||||||||||||||| | ||||| |||||| ||| | ||||||| ||||| Sbjct 2465 AGCGCCGCCGCCGTTTGGC---GCCGGCGGCTGGACGGTCATGCAGAAGATCATCGCCGA 2409 Query 10518 GACGCGTAACGAGCTGGCGGCCTACCGGGCCAGCAAGTACGCGGGCACC 10566 ||| | |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 2408 GACACACAACGAGCTCGCGGCATACCGGGCCAGCAAGTACGCGGGCACC 2360 >seq50663 Length=1982 Score = 152 bits (168), Expect = 2e-32 Identities = 304/448 (68%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 17494 GGCGTGTATCACGCCCCCGCGCTCGGCGTGAACTTCACCGAACCCTACGCGGTCGTCGTC 17553 || |||| | |||| || ||||| ||||||||| |||||||||| | || Sbjct 1354 GGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTACGCCTATCTTGTT 1413 Query 17554 GCGCCCGAGCTGGGCGGCGACTCACCGCTGCTGTCGTGCCGGATCACCGACCACACACCG 17613 ||||| || || | |||||| | | ||||||||||||||| |||| || || Sbjct 1414 GCGCCAGAATCCGGTGAGGACTCATCCATCACCTCGTGCCGGATCACCAACCATACCCCC 1473 Query 17614 AAGGCGTGGCAAATCCAGATCGGCGGCCGCAGCCCGAAGTGGCTGAACGATTTGATCAAC 17673 ||| ||||| | ||||| ||||| ||||| |||||| ||||||| ||||| || Sbjct 1474 GAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCTAAGTGGTTGAACGACTTGATGAAT 1533 Query 17674 TCGACCCTGGCCTGGCTGATCGACTCGATCTCAATCGTGCTGGGATTCACCGGGATTCCC 17733 | || | || ||| ||||||| ||| | |||||| | || ||| |||| || || Sbjct 1534 GCCACGTTCGCGTGGTTGATCGATTCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCA 1593 Query 17734 TCGAACCTTCTCGACGGGTTCCTCAACGACGCGTTTTTCGCGTTCCAGCTGCTGCAGCAC 17793 || |||| || ||| ||||| ||| || || | || |||||||| ||||||||| Sbjct 1594 TCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCCTGCAGCAC 1653 Query 17794 TACCAGCGCCGCGCGCAAATGGGCCCGATGCACCCGAACATCGAG-GTGATGATCCCGAC 17852 ||| | || |||| || | ||||| ||||| ||||| | ||||| || Sbjct 1654 TACGACCGACGCGACGAAGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCC-AC 1712 Query 17853 GCCGTCGCCGCCGTACAACGTCGAGGCGATCTTCACGTTCCTCACCGCGCTGTTCGACAC 17912 | || | || |||||| |||| | | ||| ||||| ||| ||| || || || | Sbjct 1713 CGCATCAGCCCCCTACAACATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTC 1772 Query 17913 CCGCGGCTACACCTCGGCGCAAGCCACG 17940 | ||||||||| | || |||| |||| Sbjct 1773 ACAGGGCTACACCACCGCACAAGTCACG 1800 Score = 84.2 bits (92), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 9/172 (5%) Strand=Plus/Plus Query 16113 CAGATCGGCTCGGTGTTCGGGATCGTGCCCCCGCAGGGCAACCTCTACTCGCTGATCAAG 16172 |||||| ||| | ||||| ||| || ||||| || || || ||| | ||||| Sbjct 102 CAGATCAAGTCGTTCTTCGGCATCCGTCCACCGCAAGGGAATCTGTACAAGTACCTCAAG 161 Query 16173 GGCCGCTGGAACAAGAATTCGGTCATTCCGCCGAAGTCGCCCGGCCAGCCCGATTCGCAG 16232 ||||| | | ||||| ||| || || ||||| ||||||||| || || || || Sbjct 162 GGCCGGTTCTCCCAGAATGCGGCGATCCCACCGAAATCGCCCGGCGAGGACG---CGAAG 218 Query 16233 GTCACGCCGTACTACGTCAAGGTCGCGATCGACAACGGCAACGCCGACTCGA 16284 || |||| |||||| || |||||||||||||||| ||||||||||| Sbjct 219 ------CCATACTTCGTCAAAGTTGCGATCGACAACGGCACCGCCGACTCGA 264 >seq42881 Length=1721 Score = 125 bits (138), Expect = 2e-24 Identities = 203/293 (69%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 12973 TCGGCGCAGATGAAGCTCGCCGAGGCGCAGCAGGGCACCTGGAAAAAGATGGAGGACACC 13032 || ||||| |||||||| ||||||||||||| ||||| ||| |||||| ||| Sbjct 1418 TCAGCGCAAATGAAGCTGGCCGAGGCGCAGCGCGGCACGGTGAAGAAGATGAAGG----- 1472 Query 13033 GCCAAGCAGTTCTCTCAGGGCATGGAGGGGATCGGCGCGGCGCTCGACAACGACCTCGGC 13092 ||| || | | | |||| || ||| ||||| ||| || |||| ||||| Sbjct 1473 GCC-------TCACCGACGAGATGGGGGAGATTGGCGCCAAGCTGGATGCCGACTTCGGC 1525 Query 13093 ATCAGCAAGGGCCTGCCAGGCCTCGCCGAGAACCTCGTGAAGTTCCTCGCCAACCTCGCC 13152 | ||||||||| || || |||||||| || ||||||| |||| || ||||| Sbjct 1526 GCCTCCAAGGGCCTCGGTGGACTTGCCGAGAATCTAACGAAGTTCGTCGCGAATCTCGCG 1585 Query 13153 GCGGCCCCGCTGCTCGGCCAGCTGTCGGCCATCAGTCAGGCAAACCCGATCCAGGGCGGC 13212 || ||| |||| || ||||| || || || || ||||| | ||||||| Sbjct 1586 TTCGCGCCGATGCTTGGGCAGCTCAGCGCTATAAGCGCCGCCAACCCCTCCAAGGGCGGA 1645 Query 13213 CACGGCCTGATGGGCATTCTCGGCGCGCAGGGCGTGTTCGGACCTCAGTACAC 13265 |||| |||||||||| ||||| |||||||| || ||||| || |||| ||| Sbjct 1646 TACGGGATGATGGGCATCCTCGGGGCGCAGGGTGTATTCGGGCCGCAGTTCAC 1698 >seq45817 Length=532 Score = 105 bits (116), Expect = 2e-18 Identities = 195/282 (69%), Gaps = 23/282 (8%) Strand=Plus/Minus Query 29883 GTGCGCGTCGTGCTCATCGACGGCGAGCCGTGGTTCGTCCTCGCCGACCTCTGCAAGGTG 29942 ||||| ||||| | |||| |||||| || ||||||||||| || ||||||||||||||| Sbjct 279 GTGCGGGTCGTCGTTATCGGCGGCGAACCCTGGTTCGTCCTGGCTGACCTCTGCAAGGTG 220 Query 29943 CTCGACATCCG--CAA-------CGTCAAGGACGTTCGGGATCGCTTAGCGGATGGGG-- 29991 || | ||| | | ||||| ||| ||| | | ||| | | | || Sbjct 219 CTGGGCATTTTGTCGAGTAGTGCCGTCACGGATGTTAAGAAGCGCCTTGACCAGGGCACT 160 Query 29992 -TAGATCAGACCTACCCCATCGCTGACAGCCTCGGTCGCACGCA-GCAGGCGACC---AT 30046 | ||| |||| | || || ||||| || | || || | |||| || Sbjct 159 CTGGATTCGACCAAGGTTAT----GAA---CTCGGCCGGATACATGCGTGAGACCGACAT 107 Query 30047 CGTGTCCGAGTCGGGCATGTACGAGGTCGTCATCCGCTCGGACAAACCCGAGGCCGTCGC 30106 ||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct 106 CGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGTCGA 47 Query 30107 GTTCCGCCGCTGGATCACCGGCACCGTTCTCCCCGAGATCCG 30148 |||||| || | | || || || ||||| ||| ||||| Sbjct 46 GTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 >seq50019 Length=220 Score = 95.1 bits (104), Expect = 4e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 4262 CGACGGCCTCACCCTCGACGGGTACGGCGCGGTGTTCAACAGCGTCACCGTGATCGACAG 4321 ||||||||||||| | || || |||||||||||||||||| |||| ||||||| Sbjct 170 CGACGGCCTCACCTTTGAAGGCTACGGCGCGGTGTTCAACTCGCCCACCCGGATCGACTC 111 Query 4322 CTACGAGGGCCGGTTCAAGGAACTCATCGCGCCCGGCTCGATGAAGCGGTCATTTCGCGA 4381 || || ||| ||| | |||| ||||| ||||| || | ||| ||||||| Sbjct 110 CTGGGAAGGCACATTCGATGAACAGATCGCACCCGGTGCGTTCCGTAAGTCGCTTCGCGA 51 Query 4382 GTCGC-CGCCCAAGGTGCAGTTCGACCACGGCCGACACCCGATGATCGG 4429 | ||| | |||||| | |||||||||||||| | ||||| ||||||| Sbjct 50 G-CGCACACCCAAGTTCCAGTTCGACCACGGACACCACCCCCTGATCGG 3 >seq38559 Length=768 Score = 84.2 bits (92), Expect = 7e-12 Identities = 196/292 (67%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 17313 GCAGCCGGATCGGTGGGCAAACCTCACCAAACCGACCTATGTCGTCACG---GTCAAGGA 17369 |||||| |||| |||| | |||| |||| || |||||| | || ||| || Sbjct 12 GCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCGACTGTC---GA 68 Query 17370 CCGCAGCCAGATCTCGGGCCCGACGCACACGATCCTCGACTCGGTGTTCCGCACCGCGGT 17429 ||||||||| ||| ||||| || | || |||| || ||||| || || || | || Sbjct 69 CCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGGACGGTAGT 128 Query 17430 CGACCTCGGCGGATCGCTCGGCGACATCTTCTACCCGATCAT-CCGCGAGGTGCAGTCGA 17488 ||||| || ||||||||||||| |||||| | ||| |||| || || | | | | Sbjct 129 GGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTCCCCGGC-A 187 Query 17489 TGCCGGGCGTGTATCACGCCCCCGCGCTCGGCGTGAACTTCACCGAACCCTACGCGGTCG 17548 || || |||| |||| || ||||| ||||||||| |||||||||| Sbjct 188 TGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTACGCCTATC 247 Query 17549 TCGTCGCGCCCGAGCTGGGCGGCGACTCACCGCTGCTGTCGTGCCGGATCAC 17600 | || ||||| || || | |||||| | | |||||||||||||| Sbjct 248 TTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCGTGCCGGATCAC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150370123858500