Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq42965 104 2e-17 seq338 93.3 4e-14 seq472 89.7 5e-13 seq436 84.2 2e-11 >seq42965 Length=562198 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| ||||| || | ||||||| || || ||||||||||| | Sbjct 301184 CCTCCCCTCAAGCGCAGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAC 301243 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || |||||||| || | | |||| | | ||| ||||| ||||| Sbjct 301244 AGGGTGCGCCCATCTTCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 301303 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 301304 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 301363 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 301364 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | |||||||| || |||||||||||| | Sbjct 301412 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301471 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || || || || ||||| |||| | |||| | | ||| ||||| ||||| Sbjct 301472 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 301531 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 301532 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 301591 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 301592 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301638 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | |||||||| || |||||||||||| | Sbjct 301640 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301699 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || || || || ||||| |||| | |||| | | ||| ||||| ||||| Sbjct 301700 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 301759 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 301760 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 301819 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 301820 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | |||||||| || |||||||||||| | Sbjct 301868 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301927 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || || || || ||||| |||| | |||| | | ||| ||||| ||||| Sbjct 301928 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 301987 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 301988 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 302047 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 302048 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | |||||||| || |||||||||||| | Sbjct 302096 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 302155 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || || || || ||||| |||| | |||| | | ||| ||||| ||||| Sbjct 302156 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 302215 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 302216 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 302275 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 302276 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | |||||||| || |||||||||||| | Sbjct 302324 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 302383 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || || || || ||||| |||| | |||| | | ||| ||||| ||||| Sbjct 302384 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 302443 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 302444 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 302503 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 302504 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | |||||||| || |||||||||||| | Sbjct 302552 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 302611 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || || || || ||||| |||| | |||| | | ||| ||||| ||||| Sbjct 302612 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 302671 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 302672 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 302731 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||| || || ||||| || |||||||| Sbjct 302732 TCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTTACGAAGATCTGCAT 302778 >seq338 Length=5205875 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||||||| || || | ||||| || | | Sbjct 2398051 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCA 2398110 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || ||||| || ||||| || || |||||| ||||| Sbjct 2398111 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACA 2398170 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | || || ||||||| || | || || || || || |||||| Sbjct 2398171 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 2398230 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2398231 ACGAAAATCTGCAT 2398244 >seq472 Length=1492349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||||||| ||| || | ||||| || | | Sbjct 1223251 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCGTCTTCCAACTGTTTGCCAGCA 1223192 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || | ||| || |||| || || |||||| ||||| Sbjct 1223191 AAAATCAGTCTTTGCTGATCGGAAGGAATTTCTTCCTTATCCTGGATTTTGGCTTTTACA 1223132 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | || || ||||||| || | || || || || || |||||| Sbjct 1223131 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 1223072 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1223071 ACGAAAATCTGCAT 1223058 >seq436 Length=2687165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||||||||| | ||| || || || || || || || | | Sbjct 806626 GACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCA 806685 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || |||||||| || ||| || || | Sbjct 806686 AAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 806745 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | |||||||||| || | || || ||||| ||||| || Sbjct 806746 TTCTCAATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTC 806805 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 806806 ACAAAGATCTGCAT 806819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495947583540000