Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq460 104 2e-17 seq43265 100 3e-16 seq44605 95.1 1e-14 seq472 95.1 1e-14 seq436 95.1 1e-14 seq338 95.1 1e-14 seq139 93.3 4e-14 seq432 91.5 1e-13 seq347 91.5 1e-13 seq46174 86.0 6e-12 seq598 86.0 6e-12 seq5 86.0 6e-12 >seq460 Length=2238155 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | | || ||||| ||| | || |||||| | || || ||||| || Sbjct 439795 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 439736 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| || || | |||| |||||||| ||||| | Sbjct 439735 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCGGGTGAG 439676 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| | |||| ||||| | |||| |||||| | |||||| Sbjct 439675 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 439616 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| ||||| || || | || |||||||| Sbjct 439615 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 439569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 126900 GCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAAT 126959 ||| ||||| ||| | || |||||| | || ||||| || | ||||| || Sbjct 439061 GCAGCACCAGATGCAGGGTGGACTCT----GGATGTTGTATTCAGAGACAGTGCGGCCAT 439006 Query 126960 CGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGT 127019 | || |||||||| || || | ||||| |||||||| ||||| | ||||||||||||| Sbjct 439005 CTTCCAGCTGTTTGCCCGCAAATATCAAGCGCTGCTGGTCGGGTGAGATGCCCTCCTTGT 438946 Query 127020 CCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCG 127079 | | |||| ||||| | |||| |||||| | |||||| |||| ||| | | Sbjct 438945 CTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 438886 Query 127080 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| ||||| || || | || |||||||| Sbjct 438885 TCTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 438852 >seq43265 Length=2440742 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || |||||||| || || || || || | ||||| | Sbjct 2202542 CGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCA 2202601 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || | |||| |||||||| | ||| || |||||||||||| Sbjct 2202602 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTGGGTGGGATGCCCTCCTTG 2202661 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| ||||| | |||| |||||| | | ||| | || ||| | Sbjct 2202662 TCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCCTGACCTTGAGGGTGATG 2202721 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 2202722 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2202756 >seq44605 Length=175201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || ||||| | ||| ||||| ||||||||||| || ||||| || Sbjct 1682 GCACCACCACGAAGTCTTAACACAAGATGAATCGTGGACTCTTTTTGGATGTTGTAGTC- 1740 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || | ||||| ||||| | |||| || |||||||| ||| Sbjct 1741 ---AAAGTACGCCCATCTTCCAACTGTTAGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 1797 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| |||||| || | | ||| | || ||| | ||| Sbjct 1798 GGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGCTCA 1857 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || | || ||||||| ||||||||||| Sbjct 1858 ACCTCGAGGGTGATGGTCTTCCCTGGGAGGGTTTTTATGAAAATCTGCAT 1907 >seq472 Length=1492349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | ||| ||||| ||||| || ||||| || Sbjct 1223287 GCACCACCACGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCA 1223228 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || || || | |||||| ||||| | |||| || |||||||||| | Sbjct 1223227 GACAAAGTACGCCCGTCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAA 1223168 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || | ||||| ||| |||||| || | | ||| | || |||| || Sbjct 1223167 GGAATTTCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 1223108 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || |||||||| ||||||||||| Sbjct 1223107 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 1223058 >seq436 Length=2687165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||| ||||| || | ||||| ||| || ||||| || || Sbjct 806395 GTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 806454 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | ||||||||| ||||| ||||| || || ||| ||| || ||| Sbjct 806455 GCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 806514 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || |||| ||| | || ||||||||||| || Sbjct 806515 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 806574 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 806575 TTCACGAAGATCTGCAT 806591 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | ||||||||||| ||||| ||||| || | ||||| | Sbjct 806605 CGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCA 806664 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || ||||| ||||| || || Sbjct 806665 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 806724 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | || || |||| ||| | Sbjct 806725 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCGAGGGTGATG 806784 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || ||||| || ||||| |||||||| Sbjct 806785 GTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 806819 >seq338 Length=5205875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | | | ||||| ||||| || ||||| || Sbjct 2398015 GCACCACCATGGAGTCTCAACACAAGATGAAGCATGGACTCCTTTTGGATGTTGTAGTCA 2398074 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | |||||| ||||| | |||| || |||||||| ||| Sbjct 2398075 GACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 2398134 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| |||||| || | | ||| | || |||| || Sbjct 2398135 GGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 2398194 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || |||||||| ||||||||||| Sbjct 2398195 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2398244 >seq139 Length=10686148 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| || || ||| | || || | |||| | Sbjct 400188 CGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGCAGTCAGACAGCATGCGGCCA 400129 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCG------GGAGGTATGCCC 127012 || || |||||||| || || | |||| |||||||| | | || || |||||| Sbjct 400128 TCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTGGTGGTGGGGGGGGATGCCC 400069 Query 127013 TCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACG 127072 |||||||| |||||| ||||| | || | |||||| | |||||| |||| | Sbjct 400068 TCCTTGTCTTGGATTTTGGCCTTGACATTCTCCATGGTGTCACTGGCCTCGACCTCGAGG 400009 Query 127073 GTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || ||||| ||||| || || || || |||||||| Sbjct 400008 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 399968 >seq432 Length=6714211 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | | ||||| ||||| || ||||| || Sbjct 4307064 GCACCACCACGAAGTCTCAACACAAGATGAAGCCCGGACTCCTTTTGGATGTTGTAGTCA 4307123 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | |||||| ||||| | |||| || |||||||| ||| Sbjct 4307124 GACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 4307183 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| |||||| || | | ||| | || || | | || Sbjct 4307184 GGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGATCGTTCA 4307243 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || || || || || |||||| ||||||||||| Sbjct 4307244 ACCTCGAGGGTGACGGTCTTCCCTGTGAGGATTTTTATGAAAATCTGCAT 4307293 >seq347 Length=5549683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | | |||||| | ||| | ||| ||||| ||||| || ||||| || Sbjct 1107944 GCACCACCACGAAGCCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCA 1107885 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || | ||| || ||||| | |||| || |||||||| ||| Sbjct 1107884 GACAGAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 1107825 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || | ||| || |||||| || | | ||| | || |||| | || Sbjct 1107824 GGAATTCCTTTCTTACCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAAGGTTCA 1107765 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || |||||||||||||||||||| Sbjct 1107764 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCAT 1107715 >seq46174 Length=2177 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | ||| ||||| ||||| || ||||| || Sbjct 1956 GCACCACCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCA 1897 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | |||||| ||||| | |||| || |||||||| ||| Sbjct 1896 GACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 1837 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||| ||| |||||| || | | ||| | || || | || Sbjct 1836 GG----CCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGACGGTTCA 1781 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||||| ||||||||||| Sbjct 1780 ACCTCGAGGGTAATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1731 >seq598 Length=3788045 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || ||||| | ||| | || || || ||||| || ||||| || Sbjct 3751611 GCACCACCAGGAAGTCTCAACAGAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCA 3751552 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || |||||||| ||||| | |||| || |||||||| ||| Sbjct 3751551 GACAGAGTACACCCATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 3751492 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||| ||| ||| |||||| || | | ||| | || |||| || Sbjct 3751491 GGAATTCCCTTCTTCTCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 3751432 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || |||||||| ||||||||||| Sbjct 3751431 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 3751382 >seq5 Length=157846 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | ||| ||||| ||||| || ||||| || Sbjct 1275 GCACCACCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCA 1216 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | |||||| ||||| | |||| || |||||||| ||| Sbjct 1215 GACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 1156 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||| ||| |||||| || | | ||| | || || | || Sbjct 1155 GG----CCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGACGGTTCA 1100 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||||| ||||||||||| Sbjct 1099 ACCTCGAGGGTAATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475199154180000