Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq39882 172 8e-38 >seq39882 Length=1284669 Score = 172 bits (190), Expect = 8e-38 Identities = 212/290 (73%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || ||||| |||||||||| || || || | ||| Sbjct 1023833 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATGGAGGCTGTGTTGATGATT 1023774 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || |||||||||||||| ||||||||| | || || ||||| Sbjct 1023773 TTAAAACCTACTTCTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGAGAACAGATAGGA 1023714 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| ||||||| ||| Sbjct 1023713 TTACCCATCAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCACCAAAG 1023654 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 ||||| | || || || ||||| || | | | | | || || || | || || | | Sbjct 1023653 ATGGCGTCTGGGCGTGGCTTTTCCACCAGCAGGGCTGGATACAGCTCCATGGCATCAATG 1023594 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 || ||||| || ||||||||||| | || || |||||||| ||| |||| Sbjct 1023593 TCACCATACAGTGCTTCCAACTCCGTGGCCATTTCCTTCTCTCCTGCAAG 1023544 Score = 132 bits (146), Expect = 7e-26 Identities = 202/286 (71%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 |||||||| || || ||||| || ||||| || |||| | |||||| | | | ||| Sbjct 1022370 CCGGCAATTTGCCTGGTGAATGACTCAACAAACTGGGTCAGTCCGTGTTCCAGTAAGATA 1022311 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || |||| | | |||| | ||| | || |||| ||| Sbjct 1022310 GAGTTGTTGTAGACAAACTGTTGGAAGTTGTACTCCTGGTCATCGATCTGAAAGGTGTCA 1022251 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || |||||||| |||||| Sbjct 1022250 GGCAGAAGGGGATGCCAGTGGTAGAGAGTGTTAAACTCAGCAGCAATTCGGTTTTGGTAC 1022191 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| |||||| | ||| || ||||| | || | |||||| || || | Sbjct 1022190 TGGAACTGTTGGTT--GAACAGCAGCTCTGGATCAAACTTCAGTTTGAAGTGATAGCCAC 1022133 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||||||||| | | ||| | ||| ||||| || || || Sbjct 1022132 TCAAGTGCTGGACATAGTCTTCGATCACAATCTTAATAGTCTCTCC 1022087 Score = 109 bits (120), Expect = 8e-19 Identities = 108/137 (79%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || |||||||| || || ||||| || | ||| || Sbjct 1019846 TCACCTTTCACGCCCATGGGCGTTGGGCAGTCGTCAGCCACAGGAGGAAGGGCTCTGGTG 1019787 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || ||||| || ||||||||||| ||||||||||||| |||||||| || Sbjct 1019786 TAGTAGGAGAGGTTCGAGAAGGCTTCCCAGCTTTTGTAGCCATAATGCAAGTTGTA-AGT 1019728 Query 10507 GGG-GGACTGTCAATCA 10522 ||| ||||| ||||||| Sbjct 1019727 GGGTGGACTCTCAATCA 1019711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723268885050000