Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_013936.1 Length=52141 Score E Sequences producing significant alignments: (Bits) Value seq49917 852 0.0 seq50663 500 3e-137 seq38559 298 2e-76 seq45035 107 6e-19 seq43497 80.6 9e-11 >seq49917 Length=2087 Score = 852 bits (944), Expect = 0.0 Identities = 944/1252 (75%), Gaps = 11/1252 (1%) Strand=Plus/Plus Query 15105 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACA 15164 || || |||| |||||||||||||| || || ||||||| ||| | ||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15165 GCCGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCA 15224 ||||| || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15225 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGG 15284 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15285 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 15344 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15345 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15404 || | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15405 CTGGAGTTCATCAACAACGGCCTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 15459 ||||||||| ||||||||| |||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15460 GCACCGTGTTGCAAGCCCTGTCGCGGGATGGGCTGTCGGTCCAGGCGTTCACCCGCATGC 15519 ||||| | ||||||||||| ||| || ||| ||||| ||| | ||| | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15520 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTGG 15579 |||| ||||| |||||| |||||||| || | |||||||| ||||| ||| | Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15580 CTCGCACAGTGCGGATGGAAACCGTTCAG-GCCGTCATCAAGGACGTTACCCAGTCGTAC 15638 | || || || ||||||||| | | | | ||||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15639 GGTGTGGATACCCGCATGGATTTGTGGCTTCCAGGTGATCCGCAGCCTGACAGGTGGGCG 15698 |||||||| ||||||||||| |||||| || ||||| ||||| || |||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15699 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGTCCG 15758 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15759 ACGAAAACCGTGCTCGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 15818 || |||||||| |||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15819 GACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCC 15878 ||||||||||| || |||||| ||||||| ||||| ||| |||| ||||| || || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15879 GCGTTGGGTGTGGATTTCGAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAG 15938 | | ||||| |||||||||||||| |||||||| |||| |||||||| ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 15939 GACACCGGCATCGATGCGTGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACATT 15998 ||| || |||| ||| ||| | |||||||| || ||||| ||||| ||||| Sbjct 906 GACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATC 965 Query 15999 ATTGGTGGCCGTAGCCCAAAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTG 16058 || || |||||| |||||||||||||||||||| |||||||||||||||||| || | Sbjct 966 ATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTGG 1025 Query 16059 ATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16118 || | |||||||||||||| || || ||| ||||||| ||||| |||||||| ||||| Sbjct 1026 ATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGGA 1085 Query 16119 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTATGACCGCCGTGACGAA 16178 |||||||||||||||||||||||||||||| || | ||| || | ||| ||||| Sbjct 1086 TTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGAG 1145 Query 16179 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCG--CCGTACA 16236 || ||||| | ||||||||||||||||||||||| ||||| || ||||| ||||||| Sbjct 1146 GTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGC--CAGCGCCCCGTACA 1203 Query 16237 ACATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGG 16296 |||||||||| ||||||| ||||||||||| | || ||| | || || || |||| Sbjct 1204 ACATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGG 1263 Query 16297 CGACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTT 16348 || ||| ||||||||||||| ||| ||||| || || || ||| |||| Sbjct 1264 CGCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 500 bits (554), Expect = 3e-137 Identities = 478/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15837 ATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTC 15896 || ||||| | |||||||||||||| |||||||| ||||| | |||||| | ||| Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15897 GAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAGGACACCGGCATCGATGCG 15956 ||||| || ||||||||| | || || || || | ||||||||| | |||| || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 15957 TGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACATTATTGGTGGCCGTAGCCCA 16016 ||| |||||| |||| || || ||||||||||||||||| || |||||||||||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 16017 AAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTGATCGACTCGCTGATGATC 16076 ||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16077 GTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 16136 || || || ||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16137 CTGGCGTTCCAGTTGATTCAGCATTATGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 16196 ||||| |||||| | | ||||| || ||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16197 GCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAACATCGAAACGGTGTTCGCA 16256 ||| ||||||| |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16257 TTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGCAAC 16316 |||||||||||| | |||||||| |||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16317 GGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 16375 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16376 TATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGTCATGTGGCGGGTTTCCCA 16435 | | | || ||| ||||| || ||||||||||| |||||||||||||| | | | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16436 GGATGAGCG 16444 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 174 bits (192), Expect = 5e-39 Identities = 205/275 (75%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 15393 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCCTGTCGTTAAACCCGGATATCCGGGCA 15452 ||||| |||||| |||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15453 TGGTTCGGCACCGTGTTGCAAGCCCTGTCGCGGGATGGGCTGTCGGTCCAGGCGTTCACC 15512 |||||||||||| | ||||||||||| || ||||| |||||| | || | ||| | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15513 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 15572 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15573 ATG-GTGGCTCGCACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCA 15631 || ||| | | || || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAG-ACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCG 1132 Query 15632 GTCGTACGGTGTGGATACCCGCATGGATTTGTGGC 15666 | |||||||| |||||||| |||||| |||||| Sbjct 1133 AGCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 136 bits (150), Expect = 1e-27 Identities = 233/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 14991 TGCGACAAGTTTTGGCAGCCGATGGGCGCGGTTGGTGGCGACCTGATCGAGGCGTCGGGT 15050 |||| |||||| ||| || ||||| | || ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15051 GCTGACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAAGGGAACAGCCCTCTC 15110 | || || || || || |||| ||||||| | ||| || | ||||||||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15111 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACAGCCGGT 15170 | | |||||||||||||| || |||||||| || | || ||||| || || Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15171 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCATGGACC 15230 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15231 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGGCCGTCG 15290 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15291 TGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 15328 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 298 bits (330), Expect = 2e-76 Identities = 289/369 (78%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16059 ATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16118 ||||| ||||||||||||| || || ||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16119 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTATGACCGCCGTGACGAA 16178 ||||||||||||||||||||||| |||||| | || ||||| || ||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16179 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAAC 16238 || ||||| ||||| || ||| ||||||| |||||||| || |||||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16239 ATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCG 16298 |||||||| || ||||| |||||||||||| | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16299 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGC 16358 || ||||||||| |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16359 CTGATGTCGCTGGTGT-TTATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGT 16417 |||||||| | || | | | | || ||| ||||| || |||||| |||| ||||| Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16418 CATGTGGCG 16426 ||||||||| Sbjct 748 CATGTGGCG 756 Score = 147 bits (162), Expect = 7e-31 Identities = 212/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 15669 CCAGGTGATCCGCAGCCTGACAGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 15728 || |||||| |||||| || |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15729 ACAGTGGACCGGTCGCAGATCACTGGTCCGACGAAAACCGTGCTCGATTCGGTGCTGCGC 15788 || || ||||| || ||| || || || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15789 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 15848 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15849 CCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTCGAGCAGCCATAC 15908 |||||||||||||| ||||| || ||||| | |||||| | |||||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15909 GCCTATTTCGTGGCCCCCGAGCCGGGTGAGGACACCGGCATCGATGCGTGCACGATCAC 15967 |||||| | || || || || | ||||||||| | |||| ||||| |||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCGTGCCGGATCAC 299 >seq45035 Length=256 Score = 107 bits (118), Expect = 6e-19 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 14356 TATGACGGTCCCGGCGCGGATGAGTATGTGGAGTTTGGTCCGCTGCTGCCCAATCAGATT 14415 || ||||| |||||| |||| | ||||| || || || |||||||| ||||||||| | Sbjct 59 TACGACGGGCCCGGCTCGGACCAATATGTCGAATTCGGGCCGCTGCTACCCAATCAGGTG 118 Query 14416 GTGTTCCTACGTACCGACCCGCGCTCACAGACGACGTTGGTGCAGGATTTGACGTCGGTG 14475 ||||| | || ||||| |||||| || || || |||||| | || | || |||||| Sbjct 119 GTGTTTTTGCGCACCGATCCGCGCGTGCACACCACCTTGGTGAAAGACCTAACCTCGGTG 178 Query 14476 CCGCCGTCGCCGCAGGAGTTGAACATTTTCCAGCAGGCG 14514 ||||| || |||||||| | | | |||||| ||||| Sbjct 179 CCGCCCTCACCGCAGGAACTCGATTTGTTCCAGGAGGCG 217 >seq43497 Length=1050 Score = 80.6 bits (88), Expect = 9e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 17540 CGTCCGTTCACTGTTCAGCAGCTGCTTGAGATTGGTGAGCAGTTCATCGAGCAGTTTTTG 17599 || |||||||| | |||||||| ||||| | ||||| ||| ||||||||||||| || Sbjct 105 CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAGCAGTTCCTG 164 Query 17600 GCGTGGGTGGTGCGCGCGGTCGCTGGGGTGTTCATCCCTGGTGAGGCATCGTTCGACCAG 17659 | | || || | || || | || |||||||| ||||| | |||||||| ||| Sbjct 165 CGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCGTTCGAGCAG 224 Query 17660 TTGCGTGATTGGGCTTTGAACATCCCCAT 17688 || || ||||| | | ||||||||| Sbjct 225 CTGGAGGAATGGGCATACAGCATCCCCAT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166629119364500