Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq53 116 4e-21 >seq53 Length=2810707 Score = 116 bits (128), Expect = 4e-21 Identities = 471/725 (65%), Gaps = 34/725 (5%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | || || ||||||| | | |||||||| |||||||| || || || | Sbjct 1303185 TAGATGTTGCTGGTATAAGGTTCAATGGACTCATTATTCCCCAAGATCTGAGCAGTTGCA 1303126 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGT 106051 || || | |||||| || || | | |||||| | | ||| |||| | | || Sbjct 1303125 GCAGTAGTCATTGGGGCAATAAGTAAACTGTTTCTTACACCATACTTTGCAATCTTG--- 1303069 Query 106052 TCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATT 106109 |||||||||| | |||||| | | | | | || | || |||| ||| |||| | | Sbjct 1303068 TCCTTGAGAAGTTTCCAGTCCCACAGGTCTG-TGGGAGTAACATTCC-ACACATCATACT 1303011 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 |||| | ||| | ||||| |||||| | || || || | ||| | ||| | Sbjct 1303010 GAAGAATTTCTTTGCTTACTGGAGAGCCCTCATAGGTTTCCTATGGACCATACTCTTTGG 1302951 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 ||| |||||||| || |||| || | | | ||| || |||| |||||| | ||||| Sbjct 1302950 CCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATAGTTTGAAAGATTTGCTTATTCA 1302891 Query 106230 TCTCCTTGGCTTCATCTGAA---TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 106286 || | | || || | ||||||| || | ||| ||||| |||| || | Sbjct 1302890 GTAACTGGACCTC---TGGACTTTCAAATGGATATCTCATCAAGATAAAAGCATCAGCCA 1302834 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-- 106344 || ||||||| || | ||||| || || || |||| || | || | ||| Sbjct 1302833 GAACTTGAACCCCAATTCCAATGGGGTGATGGCGTTTATTTGA--TACGTAT-GCCTCTG 1302777 Query 106345 -AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-G 106400 || || || | ||||| | ||| | | || | | ||| | |||||| ||| | Sbjct 1302776 GAATAGGGTAGTAGTTTCTATTAATAATTTTATTCA-AGTTTCG--AACAATGACTTCAG 1302720 Query 106401 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT-TGACATACTTTGGA 106459 ||| |||| || || | | | || || || || | | || |||||||| | Sbjct 1302719 TGACTTCAGCCAGCTTCTTAAAGTC----GTACGTGTGTTCTGATGTGACATACATATTC 1302664 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 ||||| | || ||||| || ||||| || ||| || || || ||||||| ||| Sbjct 1302663 AGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCCTCTTTGCTGGTATACTCTACTATT 1302604 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 ||||| |||| |||| | || || | |||| |||| ||||| ||||| | || Sbjct 1302603 TCTGTGCACAGGTTGCTGCATTTGATTGCTCCCAGGTTCTGCTGGTTGCTCTTATGATTA 1302544 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || | || ||||||||||||||||| || | ||||| ||||| |||| | ||| || Sbjct 1302543 CAGGAATTTTTGTAGAGCATGTAGGG-GTGTCAGTCTCTGTCTGAGACTCAATAATAGCA 1302485 Query 106640 TTCCA 106644 | ||| Sbjct 1302484 TACCA 1302480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589606530930000