Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq45057 95.1 1e-14 seq47057 86.0 5e-12 seq44026 84.2 2e-11 seq42997 84.2 2e-11 >seq45057 Length=10268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| ||||| ||| | ||||| | | |||||| | | ||||| Sbjct 1532 CCTCATGCTGCACATGGCAGGTGTATCTCTGCTCCTCTCCAGAAGGTACCACCACGGCTG 1473 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||||| || ||| | | | Sbjct 1472 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 1413 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | ||| | || | ||||| || | || || ||||||| |||||||| || Sbjct 1412 TCTGGTCCTCCCCATCCCTCTGCCAGGTCAGGGAGATCTCCGCAGTGTAGAAGCCCAGGG 1353 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 1352 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 1323 >seq47057 Length=13518 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | || || || || ||| | ||||| | | ||| || | | | | | Sbjct 852 CCTCATGCTGCACGTGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACGACCG 793 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| |||||| || ||| | | | Sbjct 792 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 733 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 732 TCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGAGATCTCCGCAGGGTAGAAGCCCAGGG 673 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTG 580 |||| || | || || | | |||||||| || | || ||||||||| Sbjct 672 CCCAGCACCTCAGGGTGGCCTCACGGTCAGAGGTGGGATGGTGGGTCACGTG 621 >seq44026 Length=106901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 404 GGCTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCC 463 ||| ||||||||||| || ||||| || || || || ||||| |||||| || ||| | Sbjct 94273 GGCCGCCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTC 94332 Query 464 ATCAGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 | ||| | | ||| | || ||||| || | || || |||||||| |||||||| Sbjct 94333 CTGGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGAGATCTCCGCAGGGTAGAAGCC 94392 Query 524 AGTGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAAC 583 |||||| || |||| || | | |||||||| || | || ||||||||| | Sbjct 94393 CAGGGCCCAGCACCTTAGGGTGGCCTCACGGTCAGAGGTGGGGTGGTGGGTCACGTGTGC 94452 Query 584 CTGTGG 589 || ||| Sbjct 94453 CTTTGG 94458 >seq42997 Length=3288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 404 GGCTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCC 463 ||| ||||||||||| || ||||| || || || || ||||| |||||| || ||| | Sbjct 2650 GGCCGCCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTC 2709 Query 464 ATCAGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 | ||| | | ||| | || ||||| || | || || ||||||||||||||||| Sbjct 2710 CTGGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGAGATCTCCGCAGGATAGAAGCC 2769 Query 524 AGTGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAAC 583 |||||| || | || || | | |||||||| || | || ||||||||| | Sbjct 2770 CAGGGCCCAGCACCTCAGGGTGGCCTCACGGTCAGAGGTGGGGTGGTGGGTCACGTGTGC 2829 Query 584 CTGTGG 589 || ||| Sbjct 2830 CTTTGG 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397501187142000