Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq46616 123 3e-23 >seq46616 Length=2424040 Score = 123 bits (136), Expect = 3e-23 Identities = 183/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 |||| |||||||| || || | |||||||| ||| |||| |||| ||| ||| |||| Sbjct 634050 AACTAAAGAACATACAAGTTACCAATCACACTCAGTGGTCTGAGAACGGGACCTGTGAGA 634109 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||| ||| |||| | | ||| || | ||||| ||| ||||| ||| ||||| Sbjct 634110 TCCAACTGGCCTGCTGGGCGGAGAATTCA---GACAATGACTCATTCAAGTGGCAGGCCC 634166 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 || | | | | ||| | || ||||| || |||||||||| |||||||| | Sbjct 634167 CAGGAATGTCACCTCTGAATGGACCAAACCTTACTGCCTCCTGGGATCCCAGGAATTCTA 634226 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 | || ||||||||||| |||| ||| || ||| | | |||||| | ||| | |||| Sbjct 634227 GCGAACAGAACTACACATGCAACGCTGAGAACCCCATCAGCAATTTGAGCTTCTCCGTCT 634286 Query 2446 CGGCCCAGAAGCTGTGTGA 2464 | ||||||| ||| ||||| Sbjct 634287 CTGCCCAGAGGCTCTGTGA 634305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628883998470000