Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_016651.1 Length=14270 Score E Sequences producing significant alignments: (Bits) Value seq46163 161 9e-36 >seq46163 Length=1271 Score = 161 bits (178), Expect = 9e-36 Identities = 336/495 (68%), Gaps = 24/495 (5%) Strand=Plus/Plus Query 3586 ATGAGCTTCCGGACCGCCTACGGCCATTCCCACTCGGAGAACGGGTGGCGGATGTGCAAC 3645 ||||| ||||| ||||| |||||| || | || |||||||| ||||| ||||||||| Sbjct 727 ATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATGTGCAAC 786 Query 3646 CACGACGAAACCGTGACCGTGAAAGTGGTCCCGGGGTCCGTCGGCG------CCCCGATC 3699 | |||||| || | ||| | | | | || | ||| || | ||| | Sbjct 787 CGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCACCGCTG 846 Query 3700 CGCCGGGGCGCCCCCGCGACGATCCTCAACGCCTGGTTGATCGAATACGACCGGCACGTC 3759 ||| ||||||||| ||| |||||| ||||||| || | || ||||| ||||| Sbjct 847 CGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGCAACGTC 906 Query 3760 GAACCGATCACATCCCAGGTGTGGGGCTGGTCGAGGGAC-AACGACGT-CGCGAACAGTA 3817 ||| |||||| |||| |||||||| ||||| | || ||||| || ||| ||||||| Sbjct 907 GAAGAGATCACCTCCCCCGTGTGGGGGTGGTCT-GCCACTAACGATGTTCGCCAACAGTA 965 Query 3818 ACCACCTCGCCGGGACCGCCGTCGACATCAACGCCCCGAAATACCCGTGGG-GC------ 3870 | ||||| || || ||||| || ||| | | || || || ||||| ||| || Sbjct 966 ATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAGTACCCCTGGCAGCGGTACA 1025 Query 3871 CGCCGGGTCATGCCACGCGAACGGATCCTGCGGGTCCGCGCCGCCCTCAACCGTTTCGAG 3930 || || | ||||||| | | ||||||| | ||| | |||||| Sbjct 1026 CGATGGATGCCGCCACGCAGGCCAA-------GGTCCGCAAGGGCCTGGCGCTGTTCGAG 1078 Query 3931 GGATCCGTGTTCTGGGGCGCCGACTGGTCCCGGGCCGATGAGATGCATTACCAACTCGCG 3990 || || |||||||||||| ||||||||| || |||| |||||||| ||||| | || Sbjct 1079 GGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCACTACCAGATGGCC 1138 Query 3991 TGGCGTGAAGGCGACCCCCGGGTCGATGCGTTCGCCCGCAAACTCGAGGGCGGACACCTG 4050 |||| || |||||| || || ||||||||| ||| || | |||| |||| Sbjct 1139 TGGCCCGAGGGCGACAAGCGCAATGACGCGTTCGCCGCCAAGCTGCGCGCCGGATACCTC 1198 Query 4051 GGGATCTACGGCGCC 4065 || |||||| ||||| Sbjct 1199 GGCATCTAC-GCGCC 1212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45518873984250