Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31]
50,750 sequences; 2,846,580,235 total letters
Query= NC_016652.1
Length=49330
Score E
Sequences producing significant alignments: (Bits) Value
seq42625 154 5e-33
>seq42625
Length=623
Score = 154 bits (170), Expect = 5e-33
Identities = 195/263 (74%), Gaps = 15/263 (6%)
Strand=Plus/Plus
Query 702 TGGACGTCGCACCACAACCGCACGACGACGAACACGTTCCGATCGATGCAATCGATGGTG 761
||||| ||||||||||| || ||||| || || || ||||| ||| | || | ||||||
Sbjct 8 TGGACTTCGCACCACAATCGAACGACCACAAATACCTTCCGTTCGTTCCAGGCAATGGTG 67
Query 762 ---CGGAAGAAGA-AG------ATCTGG---CCGCACG-TCGCAGCG-ATCCGCACCGCC 806
|| ||| || || |||| | | | || ||| | | ||||| |||
Sbjct 68 AAACGCAAGGCGATAGCCCCGCATCTAGAGCCTGGGCGGTCGAACGGTATCCGTGAAGCC 127
Query 807 AACGGCGAGCAAGAGATCGTGTTCACCAACGGGTCGATCATCATGTTCGGCGCACGCGAG 866
||||| ||||| |||||| ||| ||||||||||||||||||||||| || || |
Sbjct 128 AACGGTGAGCAGGAGATCCGGTTTCGTAACGGGTCGATCATCATGTTCGGTGCTCGAGCT 187
Query 867 CAGGGCTTCGGCCGCGGCATGGAAGCCATCGACATCGAGGTGTTCGACGAAGCACAGATC 926
|| |||||||| ||||||||||| | ||||| |||||||| ||||||||||| |||||
Sbjct 188 CAAGGCTTCGGGCGCGGCATGGACGAGATCGATATCGAGGTCTTCGACGAAGCGCAGATA 247
Query 927 CTGGGCGTGAAGGCGCTCGAGGA 949
|| || | ||||||||||||||
Sbjct 248 CTCAGCCTCAAGGCGCTCGAGGA 270
Score = 125 bits (138), Expect = 2e-24
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1084 GCGATCAGGTGTACGTCGAGATCTCCGCCGACCCGAACACTGACCCGGACGATCAGTCCA 1143
|||| |||||||| || ||| ||||||| || | ||| | | ||||| ||||||||
Sbjct 432 GCGACCAGGTGTATGTGGAGTTCTCCGCAGATTCCAACGCCAAGCCGGATGATCAGTCGC 491
Query 1144 AGTTCGCCACGTTCAACCCGTCCTACCCGCACCGCACACCGCTCGAATCGATGCTGCGAA 1203
||| | | | || || |||| ||||||| | || || || || ||||||||||| |
Sbjct 492 AGTGGCGGAAGATGAATCCCTCCTTCCCGCACAGGACTCCTCTGGAGTCGATGCTGCGGA 551
Query 1204 TGCGGGAGAACATCCCCGACGAAGACTCATGGCGCCGTGAGGCAATGGGGATCTGGCCG 1262
|||| ||||||||||||||||| ||||| ||| || | || ||||| |||||||||
Sbjct 552 TGCGTGAGAACATCCCCGACGATGACTCGTGGGCGCGCGCAGCTATGGGCATCTGGCCG 610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157639340378000
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |