Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq48864 217 2e-51 seq75 125 8e-24 seq199 107 2e-18 >seq48864 Length=438413 Score = 217 bits (240), Expect = 2e-51 Identities = 505/748 (68%), Gaps = 15/748 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 |||||||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 419726 CATAACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 419784 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | ||| | ||||| |||||||| ||||||||||| | | | | ||| || Sbjct 419785 CCAGTAAAATATTCTCCATAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATC 419844 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | |||| || ||| |||| |||||||| || ||||| | ||| | | ||| Sbjct 419845 CCAGTTCCAGCATAAGTCTATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGT 419903 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | || |||| || || || || | || ||| ||| ||| | | || | | | ||| Sbjct 419904 TCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACA 419963 Query 37110 GCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATTTTAAATA---TTT 37165 |||| ||| || | | | ||| ||| | | || ||| | || ||| Sbjct 419964 GCATTGATAATGATTT---CTTTCACTCTCTGCTCTAACGG-ATAGTGTAGCAGGCGTTT 420019 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | | |||| || ||| ||||||| |||||||| || |||| |||||| || Sbjct 420020 GAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGA 420079 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | | || || || | ||| ||||| |||||| || || Sbjct 420080 AAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCC 420139 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-C 37344 || |||||| || ||||| ||||||||||| |||||| |||| || | || | | Sbjct 420140 AGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTC 420199 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | || |||||| | ||||||||||| || ||||| || |||| Sbjct 420200 CTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTT 420259 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||| || | |||||||| | |||||| |||| | || ||||| ||||| || | Sbjct 420260 CAATGGCACTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGA 420319 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 |||||||||||||||| | || ||||| || || || || || ||||| ||||| | | Sbjct 420320 AACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGG 420379 Query 37525 CTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 |||| | |||| | ||| || | ||| | || | | ||||||||| || || ||| Sbjct 420380 CTTCTG-TAATGTCAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCA 420438 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACAT 37611 |||| ||| |||||||||| ||||||| Sbjct 420439 TCACATGCTACAAAGAAAGCCAGAACAT 420466 Score = 214 bits (236), Expect = 2e-50 Identities = 504/748 (67%), Gaps = 15/748 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 |||||||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 414803 CATAACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 414861 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | ||| | ||||| |||||||| ||||||||||| | | | | ||| || Sbjct 414862 CCAGTAAAATATTCTCCATAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATC 414921 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | |||| || ||| |||| |||||||| || ||||| | ||| | | ||| Sbjct 414922 CCAGTTCCAGCATAAGTCTATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGT 414980 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | || |||| || || || || | || ||| ||| ||| | | || | | | ||| Sbjct 414981 TCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACA 415040 Query 37110 GCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATTTTAAATA---TTT 37165 |||| ||| || | | | ||| ||| | | || ||| | || ||| Sbjct 415041 GCATTGATAATGATTT---CTTTCACTCTCTGCTCTAACGG-ATAGTGTAGCAGGCGTTT 415096 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | | |||| || ||| ||||||| |||||||| || |||| |||||| || Sbjct 415097 GAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGA 415156 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | | || || || | ||| ||||| |||||| || | Sbjct 415157 AAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGAC 415216 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-C 37344 || |||||| || ||||| ||||||||||| |||||| |||| || | || | | Sbjct 415217 AGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTC 415276 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | || |||||| | ||||||||||| || ||||| || |||| Sbjct 415277 CTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTT 415336 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||| || | |||||||| | |||||| |||| | || ||||| ||||| || | Sbjct 415337 CAATGGCACTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGA 415396 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 |||||||||||||||| | || ||||| || || || || || ||||| ||||| | | Sbjct 415397 AACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGG 415456 Query 37525 CTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 |||| | |||| | ||| || | ||| | || | | ||||||||| || || ||| Sbjct 415457 CTTCTG-TAATGTCAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCA 415515 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACAT 37611 |||| ||| |||||||||| ||||||| Sbjct 415516 TCACATGCTACAAAGAAAGCCAGAACAT 415543 >seq75 Length=11204613 Score = 125 bits (138), Expect = 8e-24 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || |||| |||||||||||| || | || ||||| | |||| ||| || Sbjct 8448222 TCATCTCTGCTAATCAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8448281 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| |||||| || ||||||||||| || ||||| ||||||||||| ||| Sbjct 8448282 AGCCAGAATATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 8448341 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 8448342 ACAACACGT 8448350 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 8444860 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 8444918 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 8444919 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 8444952 >seq199 Length=4383281 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || || Sbjct 4204741 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 4204682 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| || Sbjct 4204681 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 4204622 Query 37320 ACAA 37323 |||| Sbjct 4204621 ACAA 4204618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591941049030000