Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq598 185 7e-42 seq388 129 5e-25 seq46569 113 4e-20 seq398 104 2e-17 seq579 100 2e-16 seq44019 86.0 5e-12 seq73 84.2 2e-11 seq90 82.4 6e-11 >seq598 Length=3788045 Score = 185 bits (204), Expect = 7e-42 Identities = 433/648 (67%), Gaps = 29/648 (4%) Strand=Plus/Plus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACG-TGATCCAGGTA 29825 ||||| ||||| || || |||| |||||| | ||| | || || | |||| |||||| Sbjct 455291 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCGGTGGCTCAGCCATGATTCAGGTA 455350 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 || | |||||||| || || ||||| || || || || | |||| ||| || Sbjct 455351 ACTATGTGGGTCTCCCAAAGTATGTACAAAGTCACCTGGCCTAAGGTCTGTGATGTGTGC 455410 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT-AAAGG-GTACCCCGAGCCCCATG 29943 ||||| |||||||| | | |||||||| ||||| ||||| || ||| | || | | Sbjct 455411 AATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAAAGGCGTGCCCAGGACCACGTC 455470 Query 29944 TCCC-----CCGACCTCTGG----TAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 |||| |||||||| | |||||||| || || ||||| ||||| |||| | Sbjct 455471 TCCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGACAGCTCGCCGTCCACCACGCAG 455530 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30054 ||||| || | | ||||| ||||| | ||||| || | |||| || ||||| Sbjct 455531 AACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGAGGGAGAGCTTTTGGATTCCAA 455590 Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30114 || || ||||| | ||||| || || ||| |||| ||| | | |||||| Sbjct 455591 GCACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTGATAGTGTCAATCACTTTTTGC 455650 Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 || || || || ||| || ||||||| |||| | |||| ||||| || ||| Sbjct 455651 AGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATATTTTTGTATTCTGCCCCAAAA 455710 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || ||||||||||| || || || || |||| ||| || ||||| ||| ||| ||| Sbjct 455711 TGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCTTCTTCTCTGGTGGAGAATCCC 455770 Query 30235 CTCTTGTCCAAAAAGTC------TC--TGGA--------ACCGTTGGCGTCCCAGATCTT 30278 ||||||||||||| || || | | | ||| | |||||||| || Sbjct 455771 AGGCTGTCCAAAAAGTCCTGAGATCATTGTAGCCCCGAGATCATTGTCATCCCAGATTTT 455830 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 || ||||| || || | || | ||||||||| || ||| ||||| |||| ||| Sbjct 455831 CACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCCCTTGATAAACCAAAGCAACTC 455890 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 |||| || ||||||| || || | ||||| || || || ||||| Sbjct 455891 TTCCAAAACCCCCTTCCAGAATACAC-GTTGGTTGTCAGCAGAGGAAA 455937 >seq388 Length=3990105 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| ||||| Sbjct 2997472 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2997413 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||||||||| || || ||||| || || | Sbjct 2997412 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2997353 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | | ||||| ||||| || ||||| || Sbjct 2997352 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAG 2997309 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || ||||| ||||||||||| || || || || |||| ||| || |||| Sbjct 2992999 TGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTT 2992940 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | ||| ||| ||| ||||||||||||||| || || ||||| |||||||| | Sbjct 2992939 CTCTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTT 2992880 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | || ||||| || || || |||| ||||||||| || Sbjct 2992879 TCACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGGATCC 2992840 >seq46569 Length=4817335 Score = 113 bits (124), Expect = 4e-20 Identities = 177/250 (71%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 4565593 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 4565534 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct 4565533 TAAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGGTATT 4565474 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 112258 || || ||| |||||||| |||| |||| || |||| | ||||| || || | Sbjct 4565473 TTGTTTACCTTCTACTGAAGAGGTAGTGGTCGTTCTCTGGAAA-TACTTAAATTCATTCC 4565415 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 ||| ||| |||| ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 4565414 TGAGT------GGAGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGG-GACA 4565362 Query 112319 CGGCCACGAT 112328 || ||||| Sbjct 4565361 TAGCGACGAT 4565352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/242 (70%), Gaps = 10/242 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 4191913 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 4191972 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||| ||||||||| || ||||| || || ||||| |||||||| ||||| || Sbjct 4191973 TAAAGGCTGATTCTTTTCAGGAATGGAAAATCAGGTCTTCCTACCCATAATCACGGTATT 4192032 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 112258 || || ||| |||||||| | | ||||| || |||| | ||||| || || | Sbjct 4192033 TTGTTTACCTTCTACTGAAGAAATTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTCC 4192091 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 112316 || ||| | |||| ||||| || || || || |||||||||||| ||| ||||| Sbjct 4192092 TGAG-----CAG-AGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGGGACA 4192145 Query 112317 CA 112318 || Sbjct 4192146 CA 4192147 >seq398 Length=3125954 Score = 104 bits (114), Expect = 2e-17 Identities = 177/250 (71%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 112081 TGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTC 112140 |||||||| || || || || || || || |||| || | || || |||||| | Sbjct 2057361 TGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAAAACAAAATTAATTCTGTCTTTT 2057302 Query 112141 AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTC 112200 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| | || Sbjct 2057301 AAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGATATTT 2057242 Query 112201 TGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCA 112259 || || ||| |||||||| || ||||| || |||| | ||||| || || | Sbjct 2057241 TGTTTACCTTCTACTGAAGAAGTTATGGTCATTCTCTGGAAA-TACTTAAATTCATTCCT 2057183 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 || ||| | |||| |||| || ||||| || |||||||||||| ||||| ||| Sbjct 2057182 GAG-----CAG-AGGCCAGGGCAAGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GACA 2057130 Query 112319 CGGCCACGAT 112328 | || ||||| Sbjct 2057129 CAGCGACGAT 2057120 >seq579 Length=4107578 Score = 100 bits (110), Expect = 2e-16 Identities = 176/250 (70%), Gaps = 11/250 (4%) Strand=Plus/Minus Query 112081 TGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTC 112140 |||||||| || || || || || || || ||||| || | || || |||||| | Sbjct 165511 TGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACAAA-TTAATTCTGTCTTTT 165453 Query 112141 AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTC 112200 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| | || Sbjct 165452 AAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGATATTT 165393 Query 112201 TGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCA 112259 || || ||| |||||||| || | ||||| || |||| | |||| || || | Sbjct 165392 TGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAA-TAATTAAGTTCATTCCT 165334 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 || ||| |||| |||| || | ||| || |||||||||||| ||||| ||| Sbjct 165333 GAGC------GGAGGCCAGGGCAAGTCCCGGTTCTTGCCGATGCCCATGTTCTGG-GACA 165281 Query 112319 CGGCCACGAT 112328 | || ||||| Sbjct 165280 CAGCGACGAT 165271 >seq44019 Length=1131195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/237 (70%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| | || || || || || || || || || |||| || || || || | Sbjct 313221 ATGAGCTCCTGGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTAAATTAATTCTATCCTT 313162 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||| ||||||||| || ||||| ||||| ||||| |||||||| |||| | || Sbjct 313161 TAAAGGCTGATTCTTTTCAGGAATGGACAACCAGGTCTTCCTACCCATAATCATGATATT 313102 Query 112200 CTGCTTGCCT-CTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTG 112257 ||| || ||| ||| ||||||| || | ||||| || |||| | ||||| || || Sbjct 313101 CTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTC 313044 Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 112313 | || | || |||| || || || ||| || | |||||||||| ||||| Sbjct 313043 CTGAGCC------GAGGCCAGGGTAGGTCCTTGTTCTTGCTGATGCCCATGTTCTGG 312993 >seq73 Length=665562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/179 (73%), Gaps = 10/179 (6%) Strand=Plus/Plus Query 112143 AGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTG 112202 ||||| |||||||| ||| || ||||| || ||||| ||||| || ||| ||| ||||| Sbjct 296083 AGGTCAATTCTTTTTGGGAATAGAGAAACAGGTCTTCCTACCTATAATCTCCATATTCTG 296142 Query 112203 CTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCAAA 112261 || ||| |||||||| |||| ||||| || |||| | || || || || | | Sbjct 296143 TTTACCTTCTACTGAAGAGGTAGTGGTCATTCTCTGGAAA-TACTTGAATTCATTCCTGA 296201 Query 112262 GTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACACA 112318 | ||| | |||| ||||| || || || || | |||||||||| ||| ||||||| Sbjct 296202 G-----CAG-AGGCCAGGGCAGGTCCCCATTCTTGCTGATGCCCATGTTCTGGGACACA 296254 >seq90 Length=1137512 Score = 82.4 bits (90), Expect = 6e-11 Identities = 178/260 (68%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || |||| |||| || || | || | Sbjct 989453 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTACTGAAAACTAAATTAATTTTACCTTT 989394 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | || | |||||||||||| ||||||||||| ||||| | |||||| |||| | | Sbjct 989393 AA-AGACCGATTCTTTTCGGGAATGGAGAACCAGGTCTTCCGACCCATAATCATGATACT 989335 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || | || |||||||| || | |||| | ||| | || | ||||| || | | Sbjct 989334 CTGTTTACTTCCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACTTAAATTCATCCC 989276 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 ||| ||| |||| ||||| | | || || | |||||||||| ||||| || Sbjct 989275 CAAG------CGGAAGCCAGGGCAGGTTGTCATTCTTGCTGATGCCCATGTTCTGG-GAC 989223 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 989222 ACAGCGACGATGCAGTTTAG 989203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408364863629750