Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq44217 93.3 1e-14 >seq44217 Length=341162 Score = 93.3 bits (102), Expect = 1e-14 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| |||||||| ||| ||||||| | || || || || || || | Sbjct 123030 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCATGTTCTGGCTTGGCTGCAAAACACTTCG 123089 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| ||| Sbjct 123090 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTAT 123149 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | || || |||||| | ||||| ||| | | Sbjct 123150 TTAATTTTGGCAAAGAAAAG---TTTGAAGTTAAAAAAGGTGACCGAATTGCACAGCTCA 123206 Query 1135 TTTGTGAA 1142 |||||||| Sbjct 123207 TTTGTGAA 123214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138598022667000