Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq598 116 3e-21 seq44605 113 4e-20 seq347 113 4e-20 seq436 111 1e-19 seq183 102 6e-17 seq153 93.3 3e-14 seq661 86.0 5e-12 seq495 86.0 5e-12 seq459 86.0 5e-12 >seq598 Length=3788045 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| || ||||| ||||| || ||| | || | | ||| || |||| Sbjct 1806257 AACACAAGATGAAGCGTGGATTCCTTTTGGATGTTGCAGTCAGACAGAGTACTCCCATCT 1806316 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| ||||| || | ||| |||| | || || || || ||||| ||||| ||||| Sbjct 1806317 TCCAACTGCTTGCCAGAAAAAATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCC 1806376 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 |||||||| ||||||| ||||| || || || | ||| || || || |||| || Sbjct 1806377 TGAATTTTGGCTTTTACATTTTCTGTTGTATCTGATGGTTCAACCTCGAGGGTGATAGTC 1806436 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||||||||| |||||||| Sbjct 1806437 TTCCCTGGCAGGGTTTTTACAAAAATCTGCAT 1806468 >seq44605 Length=175201 Score = 113 bits (124), Expect = 4e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 101257 TAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATC 101316 ||| || | |||||| || || || ||||| || ||||| || | | ||| |||| Sbjct 644 TAACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGCCCATC 703 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 ||||| || || || ||||| |||| | || |||||||| ||||| ||||| ||| | Sbjct 704 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACC 763 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTC-AGACGTTTCCACTTCAAGAGTGACCG 101435 || ||||| ||||||| |||||| || || | | | ||| || || || |||| | Sbjct 764 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGTGATGG 823 Query 101436 TTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | ||||||||||| |||||||| Sbjct 824 TCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 857 >seq347 Length=5549683 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| || || || ||||| || ||||| || | | ||| |||| Sbjct 1107926 AACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAGAGTATGCCCATCT 1107867 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| ||||| || ||||| |||| | || ||||| || ||||| |||| ||| | Sbjct 1107866 TCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTTCTTACCC 1107807 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || ||||| ||||||| |||||| || || || | ||| || || || |||| || Sbjct 1107806 TGGATTTTGGCTTTTACATTTTCTATTGTATCCGAAGGTTCAACCTCGAGGGTGATGGTC 1107747 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||||||||| |||||||| Sbjct 1107746 TTCCCTGTGAGGGTTTTTACAAAAATCTGCAT 1107715 >seq436 Length=2687165 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| ||||| || || ||||| || | | ||| | | |||| |||| ||| Sbjct 806617 TGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 806676 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || |||||||||||||| || || || Sbjct 806677 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 806736 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | |||||| || || |||| || ||||| || Sbjct 806737 GCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTG 806796 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTAAAA 101491 | ||| || ||||| |||||||| | || | || |||| ||||| Sbjct 806797 AGAGTCTTCACAAAGATCTGCATTTTGAC-CTAAAATTT-TAAAA 806839 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| ||||| || || ||||| || | | ||| | | |||| |||| ||| Sbjct 806389 TGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 806448 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| ||||| || || |||||||||||||| || || || Sbjct 806449 TTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 806508 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || |||||||| Sbjct 806509 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTC 806568 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 806569 AGGGTCTTCACGAAGATCTGCAT 806591 >seq183 Length=6694209 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| | || || |||| || ||||| || | | ||| | |||| ||||| || Sbjct 3138759 ATGAAGCATGGACTCCTTTTTGATGTTGTAGTCAGACAAAGTACACCCATCTTCCAACTG 3138818 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| ||| | | ||||| || ||||| | ||| ||||| || ||||| Sbjct 3138819 TTTGCCAGCAAAAGTCAGTCTTTTCTGATCAGGAGGAATTCATTCCTTATCCTGTATTTT 3138878 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||||| |||||| || | || | ||| |||| ||||||| || || || || Sbjct 3138879 GAGTTTTACATTTTCTATTGTATATGATGGTTCAACTTTGAGAGTGATGGTCTTCCCTGT 3138938 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||| |||||||| Sbjct 3138939 GAGGGTTTTTACAAAAATCTGCAT 3138962 >seq153 Length=9410368 Score = 93.3 bits (102), Expect = 3e-14 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| | ||| ||||| || ||||| ||| | | ||| ||||| || |||| ||||| | Sbjct 5935758 CATCTTTCAACTGCTTGCCAGCAAAAATCGATCTCTGCTGATCAGGAAGAATTCCTTCCT 5935817 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 |||| || ||||| ||||||| |||||| || || |||| || | ||||| |||| Sbjct 5935818 TATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTTC---TCAAGGGTGA 5935874 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | | ||||||||||| |||||||| Sbjct 5935875 TGGTCTTCCTCATAAGGGTTTTTACAAAAATCTGCAT 5935911 >seq661 Length=3890303 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||| |||| || ||||| |||| | || ||||| || ||||| ||||| ||| Sbjct 1910204 TCTTCCAACCGCTTCCCAGCAAAAATCAGTC--TGCTGATCAGGAGGAATTCCTTCCTTA 1910261 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || ||||| ||||||| |||||| || || || | ||| | ||||| |||| Sbjct 1910262 TCCTGGATTTTGGCTTTTACATTTTCTATCGTATCCGAGGGTTCAGCCTCAAGGGTGATG 1910321 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCA 101468 || || || | | ||||||||||| || |||| Sbjct 1910322 GTCTTCCCCATAAGGGTTTTTACAAAAATGTGCA 1910355 >seq495 Length=4822262 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 101244 CTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGA 101303 |||||| | ||| | ||| | || || |||| | |||| || |||||||| || | | Sbjct 1126887 CTCCTC--AGACGGAGAACCAGGTGTAGAGTAGGTGCTTTCTGGATATTGTAGTCAGAAA 1126830 Query 101304 TAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAA 101363 ||| | | |||| |||| ||||| |||||||| || | ||| || || || || | Sbjct 1126829 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGCGCCTCTGCTGGTCAGGGGGTA 1126770 Query 101364 TGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTT 101423 ||||||||||||| || || || || ||| | | |||||| | ||||| | Sbjct 1126769 TGCCTTCTTTATCCTGGATCTTAGCCTTCACATCCCCAATGGTGTCACTGGGGTCCACCT 1126710 Query 101424 CAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || |||| | ||||| || || | || ||||| |||||||| Sbjct 1126709 CTAGGGTGATGCTCTTGCCAGTCAAGGACTTAACAAAGATCTGCAT 1126664 >seq459 Length=1943734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || ||||| || || ||||| | || || ||| | | |||| ||| Sbjct 1019159 ACCAAGTGCAGCGTGGACTCTTTCTGGAT-TTGTAGTTGGAGAGAGTGCGGCCATCTTCC 1019101 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || ||||||||||||| | | || || || | || || ||||| || ||||| Sbjct 1019100 AGCTGTTTGCCTGCAAATATCAGATGTTGCTGGTCCCGTGGGATACCTTCCTTGTCTTGG 1019041 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | | | |||||| | ||| || ||||| ||| || ||| Sbjct 1019040 ATTTTGGTTTTGACATTCTTGATGGTGTCACTGGGTTCGACCTCAAGGGTGGTGGTCTTG 1018981 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || || | || |||||||| Sbjct 1018980 CCGGGCAGGGTCTTCATGAAGATCTGCAT 1018952 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || ||||| || || ||||| | || || ||| | | |||| ||| Sbjct 1020663 ACCAAGTGCAGCGTGGACTCTTTCTGGAT-TTGTAGTTGGAGAGAGTGCGGCCATCTTCC 1020605 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || ||||||||||||| | | || || || | || || ||||| || ||||| Sbjct 1020604 AGCTGTTTGCCTGCAAATATCAGATGTTGCTGGTCCCGTGGGATACCTTCCTTGTCTTGG 1020545 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | | | |||||| | ||| || ||||| ||| || ||| Sbjct 1020544 ATTTTGGTTTTGACATTCTTGATGGTGTCACTGGGTTCGACCTCAAGGGTGGTGGTCTTG 1020485 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || || | || |||||||| Sbjct 1020484 CCGGGCAGGGTCTTCATGAAGATCTGCAT 1020456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396033295617750