Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq47707 98.7 8e-16 seq472 98.7 8e-16 seq347 98.7 8e-16 seq338 95.1 9e-15 seq46174 93.3 3e-14 seq5 93.3 3e-14 seq598 89.7 4e-13 seq43265 86.0 5e-12 seq309 84.2 2e-11 seq50 82.4 6e-11 >seq47707 Length=6282480 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| |||||| ||| ||||| || ||||||||||| | | | || | || Sbjct 1043806 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATC 1043747 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| | ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 1043746 TTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1043687 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 | || || ||||||| | | | | | ||| || ||||| | || || || Sbjct 1043686 CTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGT 1043627 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || | ||||||| |||||||||||| || Sbjct 1043626 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCATCTTG 1043590 >seq472 Length=1492349 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| |||||| ||| ||||| || ||||| ||||| | | | || |||| Sbjct 1223270 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCGTC 1223211 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||||||| || || ||||| ||||||| || ||||| | |||| | ||||| || Sbjct 1223210 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAAGGAATTTCTTCCTTATC 1223151 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || ||||||| | | | || |||| || ||||| | || || || Sbjct 1223150 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 1223091 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || | |||||||| |||||||||||| || Sbjct 1223090 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCATCTTG 1223054 >seq347 Length=5549683 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| |||||| | ||| |||||| ||| ||||| || ||||| ||||| ||| | | Sbjct 1107932 AGCCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAGAGTATGC 1107873 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||||| || ||||| | |||| || | | Sbjct 1107872 CCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTTC 1107813 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || | || || ||||||| | | | || || | || ||||| | || Sbjct 1107812 TTACCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAAGGTTCAACCTCGAGGGTG 1107753 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||||||||||||||||||||| || Sbjct 1107752 ATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTTG 1107711 >seq338 Length=5205875 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| ||| || ||| ||||| || ||||| ||||| | | | || | || Sbjct 2398032 CAACACAAGATGAAGCATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 2398091 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||||||| || || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 2398092 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2398151 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || ||||||| | | | || |||| || ||||| | || || || Sbjct 2398152 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 2398211 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || | |||||||| |||||||||||| || Sbjct 2398212 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCATCTTG 2398248 >seq46174 Length=2177 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| |||||| ||| ||||| || ||||| ||||| | | | || | || Sbjct 1939 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 1880 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||||||| || || ||||| ||||||| || ||||| | || || ||||| || Sbjct 1879 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG----CCTTCCTTATC 1824 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || ||||||| | | | ||||||| || ||||| | ||||| || Sbjct 1823 CTGGATTTTGGCTTTTACATTTTCTATTGTATCTGACGGTTCAACCTCGAGGGTAATGGT 1764 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || | ||||||| |||||||||||| || Sbjct 1763 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCATCTTG 1727 >seq5 Length=157846 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| |||||| ||| ||||| || ||||| ||||| | | | || | || Sbjct 1258 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 1199 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||||||| || || ||||| ||||||| || ||||| | || || ||||| || Sbjct 1198 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG----CCTTCCTTATC 1143 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || ||||||| | | | ||||||| || ||||| | ||||| || Sbjct 1142 CTGGATTTTGGCTTTTACATTTTCTATTGTATCTGACGGTTCAACCTCGAGGGTAATGGT 1083 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || | ||||||| |||||||||||| || Sbjct 1082 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCATCTTG 1046 >seq598 Length=3788045 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| |||||| || ||||| || ||| | ||||| ||| | | | || Sbjct 1806256 CAACACAAGATGAAGCGTGGATTCCTTTTGGATGTTGCAGTCAGACAGAGTACTCCCATC 1806315 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| || | ||| ||||||| || || || | |||| || ||||| || Sbjct 1806316 TTCCAACTGCTTGCCAGAAAAAATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 1806375 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || ||||||| | | ||||| | || ||||| | || || || Sbjct 1806376 CTGAATTTTGGCTTTTACATTTTCTGTTGTATCTGATGGTTCAACCTCGAGGGTGATAGT 1806435 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || | || ||||||||||||||||||||| || Sbjct 1806436 CTTCCCTGGCAGGGTTTTTACAAAAATCTGCATCTTG 1806472 >seq43265 Length=2440742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | | |||| ||||| ||| || ||| |||||| || || || || ||||| Sbjct 2202529 GCCGCCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGA 2202588 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| ||| || |||||||||||||| ||||| || | | || Sbjct 2202589 AAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTGGGTGG 2202648 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 2202649 GATGCCCTCCTTGTC 2202663 >seq309 Length=2273895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48553 GCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGT 48612 ||| ||||| ||| || ||| |||||| || || ||||| ||||| ||| | || | | Sbjct 961374 GCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCAT 961315 Query 48613 CGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGT 48672 | |||| ||| || || ||||||||||| ||||| || || | || | ||||| ||||| Sbjct 961314 CTTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCGGATGGGATGCCCTACTTGT 961255 Query 48673 C 48673 | Sbjct 961254 C 961254 >seq50 Length=2506936 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| |||||| || || ||||| ||||| || | || Sbjct 1731573 AGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGG 1731514 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || || ||||||||||| ||||| || || | ||| | ||||| | Sbjct 1731513 CCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTTC 1731454 Query 48669 TTGTC 48673 ||||| Sbjct 1731453 TTGTC 1731449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380701984142250