Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq38535 185 2e-41 seq504 98.7 2e-15 >seq38535 Length=2327333 Score = 185 bits (204), Expect = 2e-41 Identities = 189/245 (77%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| || ||||||| Sbjct 355200 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGAGCCACCT 355143 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || ||| ||||| || ||||| || ||||| || | ||||||| ||||| Sbjct 355142 GCTCCCGGAGGACGCCGGCGGTGTTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCA 355083 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || ||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 355082 CCTTGTCCTCCAAGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCGGCCA 355023 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | || || ||| | ||||||||||| ||||| ||||||| ||| | Sbjct 355022 GCCGGTTCCGCAGCCGTTTGCGCTCCACTTTGATGCGTTCTTGGTCTTCCATGTTGATGG 354963 Query 241623 GAGAC 241627 | ||| Sbjct 354962 GGGAC 354958 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| || |||||| | ||||| || ||| ||||| || ||||| ||||||| Sbjct 355163 TCTGTTTGAGCTGAGCCACCTGCTCCCGGAGGACGCCGGCGGTGTTCGACAGCCCCGCGT 355104 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | ||||||| ||||||||||| |||||||| Sbjct 355103 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAAGCGCGCGATGCGCTCCAGCTT 355049 >seq504 Length=3243228 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | |||||| || ||||||||||| |||| || | | ||||| || ||| Sbjct 1222590 CATGACTTTCTGTTTAAGCTGGGCCACCTGTTCCCTAAGCATGTTGGCGGTGGAGGCCAG 1222649 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | | || | |||||||| |||||||| || ||||| | |||||| Sbjct 1222650 CTCAGAGTTCTGCGCTTTCAAGGTTTTCACTTTTTCCTCCAGTCGGGCGATCCTTTCCAG 1222709 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | ||||| |||| ||| || | |||||||| | | ||| | |||||||| Sbjct 1222710 CTTCCTTTTCCGGCACTTGGAGGCAGCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTT 1222769 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| || |||||| ||||||||| || || ||| Sbjct 1222770 GATCCGCTCCTGGGACTCCATGTCTATGGGGGAC 1222803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930941858880000