Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq191 322 6e-83 seq516 167 3e-36 seq564 102 9e-17 >seq191 Length=10176270 Score = 322 bits (356), Expect = 6e-83 Identities = 665/984 (68%), Gaps = 9/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || || | ||| |||| ||| || ||| | || |||| || ||||| || Sbjct 8683385 CAGGTGCTCATCTAAACACTGGATGGCAAAGTGGTCGATATCCACGTCAAACTTATTGGC 8683444 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| | |||| |||||| || || || | ||||| | ||| || Sbjct 8683445 AAACAGGTGGTGCCGGC---GTAGCATCCAGCTCAAATCGCCAGCTCCGAAAATGCACAC 8683501 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | |||||| || ||||||||||||| | || || || | || |||||||| Sbjct 8683502 GGAGCGGACGTGCACCCCACTGCAAGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 8683561 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| || | ||| || | ||| ||||||||||| ||| || || | Sbjct 8683562 AAAGTACTGCCACTTGACCAGCCTCGCCACCGCGTGCATGTCGGACAAGTCATACTTATG 8683621 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || || | || || || |||| || | ||| | |||||||| | || ||| Sbjct 8683622 GCTTACGGACACTGAGCCTGGCACTTCGGGGATCCTCTGGATTGTGGCCCAGACGTATTC 8683681 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCGC 160409 || |||||||| ||||| | | ||| ||||||||| | ||| | | | | | Sbjct 8683682 ATCTGGGCTGTAGGTGTCTTGTGCCCACGCCATGAACTTTTGGATCTTTTCATTTTCT-- 8683739 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGT 160469 || || | || || || | || || ||||| || ||||| ||||| || || Sbjct 8683740 AGCACATACCCCACATATCCCCTACTGACCACGAAGTAGGCACTGCCTGAGAAAATGGGC 8683799 Query 160470 ATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | || || || | |||| | || ||||| | || || ||||| | Sbjct 8683800 GTTTCCAGCGGAGGACGCAT-TTTGACGGTCCCCGTGTTGGTCAGTTTCCCATTCACGAC 8683858 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 |||| |||| ||||| || | ||| | | |||||| | || || || || | Sbjct 8683859 TGCGTAATGCTTTTTCCATCTTTCTTCCTTATTGGATGGCATCCTCTCGGTTTCCAGGTT 8683918 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| |||| | |||||| |||| | |||| || || ||||| || || | ||||| Sbjct 8683919 GTTTTCACCCATTAACGATTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAA 8683978 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || ||| || | || |||| ||||||||| | | |||| || ||||| | Sbjct 8683979 ATCCTGACCACAGAGATTGATCAAGTACTTCCAGTGTGTACTCATTCGGTAGAGGTCTTT 8684038 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | ||| ||||| || || ||||| || || || || || |||| | | Sbjct 8684039 CATGCAGTTGAGATCGGCCTGAACTCGACTCCACGATGCATAAACCACACTCTCCAACTG 8684098 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828 ||||||||| |||||||||| |||||| ||| |||| | |||||| ||||| Sbjct 8684099 ACTGGCCACGAAGACGTTATGGAAACAGGACGCGATGCTGGTCACCGCAGCTAAGAAGGA 8684158 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 || || | ||||| ||||||||| | |||||| | ||||||||| |||||||||||| Sbjct 8684159 CTCCTCTGACTTTCTGTCCACGTGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCCT 8684218 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||| | ||||||||| || || |||||||| Sbjct 8684219 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACGATAGAATATGCGATCGGAAA 8684278 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| | ||| || ||| |||| | | || || ||| ||||||| ||| || Sbjct 8684279 CTCCGCCTCTTCTTCACTAAGGGGTTCTACAATATATTTGCGCCTCTTGATGAAAGAAGG 8684338 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||| |||||||| ||||| Sbjct 8684339 GCAATCCGAGGTCATGTTTATATA 8684362 Score = 116 bits (128), Expect = 4e-21 Identities = 161/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || || | ||| |||| ||| || ||| | || |||| || ||||| || Sbjct 8681235 CAGGTGCTCATCTAAACACTGGATGGCAAAGTGGTCGATATCCACGTCAAACTTATTGGC 8681294 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| | |||| |||||| || || || | ||||| | ||| || Sbjct 8681295 AAACAGGTGGTGCCGGC---GTAGCATCCAGCTCAAATCGCCAGCTCCGAAAATGCACAC 8681351 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | |||||| || ||||||||||||| | || || || | || |||||||| Sbjct 8681352 GGAGCGGACGTGCACCCCACTGCAAGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 8681411 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 ||||||||||||| || | ||| || | ||| ||||||||||| Sbjct 8681412 AAAGTACTGCCACTTGACCAGCCTCGCCACCGCGTGCATGTCGGA 8681456 >seq516 Length=4095636 Score = 167 bits (184), Expect = 3e-36 Identities = 229/320 (72%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || || || || |||||||| ||| Sbjct 1044906 TAGAGGGTGAGGCAGGATGTTCCCGAGATCTTTCCAGAACCAAAGGTATTGAAGAGACAC 1044965 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || || || || |||| |||||||||||| || || | || |||||| |||| Sbjct 1044966 ATGTAACACCCCTCATCTTCCAGGGTGGTATTCCAGAAGGTGATGGTCGAGTTTTGGAGT 1045025 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || || || | | || ||||| | ||| || | ||||| || |||||| Sbjct 1045026 CCCAGCTCGGTGATATTGATTCTGTCCTTATAGGCAGGCTGGATCACAACACCATGGTTC 1045085 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||||||||| ||||||| || |||||| ||||| | |||||||| || || | Sbjct 1045086 TTGCTGAAGGTGACCATGTTTTCTGGGCTGACAGCCTTCTTTTTCTGCCATGTCACACTT 1045145 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || | | ||||| |||||||| | |||| || |||||||| ||||| Sbjct 1045146 AAGACTTCCTGGGAACTTTGCAGAGAACATCTTAAGAAAGCAGGTGTGTTCAGTGGTTCT 1045205 Query 168450 CGCTCATCTTGAGTTACGAC 168469 | ||||| || || || || Sbjct 1045206 CTTTCATCCTGGGTCACCAC 1045225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930 || ||||| || |||||| | || || ||| |||||| || || |||| ||| ||| Sbjct 1041301 CCTTTGCTCAGGGTTTGCTTGAAGTTGGTCACACTTCCCAGGTGCAGCACCTGGCAGATC 1041360 Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 ||||| || || || || |||| || ||||| || | | |||| || ||| Sbjct 1041361 ACCTCC---TTCCCAACCTGTTTCTTGGGGTCTTTGACATAGAGGGTGCTGGTGACAGAC 1041417 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || ||||| | | ||| | | | || ||||| ||||||||||| | || ||| Sbjct 1041418 GTGGTCCCATTTGGGTTTAACAGACTCTCAGTACTGTTGTCAATCCCTGACACCGCAACC 1041477 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 |||||| | | ||| || | || || || || |||||||| || ||||||| Sbjct 1041478 TTCCAGGAGAGTACTGGGGGTGGGCGAGCAGTGGCAGAGCAAGTGATATTTA 1041529 >seq564 Length=8425637 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 1673170 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 1673229 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | ||| | ||||| | | || Sbjct 1673230 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 1673289 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||| | Sbjct 1673290 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 1673349 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 1673350 AGATAAAATTTACA 1673363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576853026570000