Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq53 84.2 1e-11 >seq53 Length=2810707 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | ||||| |||||| | ||| | || | ||| ||||| | |||||| || Sbjct 1302329 CATGAAGAGATCTGAAATCCAAAGGGCAAAGAAAAGATCCCTCGCATGCTGTTCTTCCTT 1302270 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||| |||| ||| | || ||||| || ||| | ||| | |||| | | Sbjct 1302269 TCCTGTG-TTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCTAAGGTTTCAGGT 1302211 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | |||||||| || | || |||||||||||||||||||| || || | | Sbjct 1302210 AAATAGCAAATGCCCCAAGACGCTTGTTTCCACCTTGATCTACGTATCGAGCTGTATTAC 1302151 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAA 26146 || | ||| ||| |||||| || | ||| | ||| Sbjct 1302150 TGTATACTCTCAGCATTGGTACAAGGCCATTGGAA 1302116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252883490806250