Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq262 109 1e-18 seq436 96.9 7e-15 seq495 91.5 3e-13 seq711 87.8 4e-12 seq42965 86.0 1e-11 >seq262 Length=1361662 Score = 109 bits (120), Expect = 1e-18 Identities = 136/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||||||| || | ||||| ||||| || || |||||||| || | ||| Sbjct 634199 GATGTTGTAGTCAGATAAAGTATGCTCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCT 634140 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || | |||||| || |||||||||||| ||| ||||| ||||||||| ||| | Sbjct 634139 TTGCTAATCAGGAGGAATTCCTTCTTTAGCTTTGATTTTGGCTTTTACATTTTCTATTGT 634080 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG-TTTTAATAAATATCT 192532 ||||| | ||| | | || |||||||| || ||| ||| | |||| | ||| |||| Sbjct 634079 GTCTGATGGTTCAGCCTTGAGGGTAATGGTCTT-CCATGTAAGGATTTTTACAAAAATCT 634021 Query 192533 GCAT 192536 |||| Sbjct 634020 GCAT 634017 >seq436 Length=2687165 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || || | || | || | ||||| |||||| || || || ||| Sbjct 806590 ATACCACCTCTCAGGCGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCA 806649 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 806650 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 806709 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | || | ||| Sbjct 806710 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCC 806769 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || ||||| | || || | ||| ||||||||||| Sbjct 806770 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCATTTT 806822 >seq495 Length=4822262 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||| || ||||| | || | |||| ||||| |||| |||||| || ||||| Sbjct 1126890 CCACTCCTCAGACGGAGAACCAGGTGTAGAGTAGGTGCTTTCTGGATATTGTAGTCAGAA 1126831 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| ||||| || ||||| ||| Sbjct 1126830 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGCGCCTCTGCTGGTCAGGGGGT 1126771 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || ||| || |||| || | || | || || Sbjct 1126770 ATGCCTTCTTTATCCTGGATCTTAGCCTTCACATCCCCAATGGTGTCACTGGGGTCCACC 1126711 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || ||| | || ||||| || | |||| ||| ||||||||||| Sbjct 1126710 TCTAGGGTGATGCTCTTGCCAGTCAAGGACTTAACAAAGATCTGCATTTT 1126661 >seq711 Length=2489675 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| || || | |||| ||||| || ||||||||||| || | || Sbjct 462071 GATGTTGTAGTCAGACAAGGTATGCCCATCTTCCAACTGCTTACCAGCAAAAATCAGCCT 462012 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || |||||||| || |||||||| ||||| | ||||| ||||||||| ||| Sbjct 462011 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTCGATTTTGGCTTTTACATTTTCTATTTT 461952 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATC 192531 ||| |||| ||| | | || | ||||| || || || | ||||| || || ||| Sbjct 461951 ATCCGACGGTTCACCCGCGAGGGCGATGGTCTTCCCTGTAAGGGTTTTTATGAAAATC 461894 >seq42965 Length=562198 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 ||||| || | ||| | |||||| ||| || || ||||| | || || |||| ||| Sbjct 301202 ACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 301261 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | |||||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| Sbjct 301262 AGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 301321 Query 192448 ATTTT 192452 || || Sbjct 301322 ATCTT 301326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983839857262500