Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq46163 107 1e-18 seq43894 86.0 3e-12 >seq46163 Length=1271 Score = 107 bits (118), Expect = 1e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 28084 ATGTCTGAGTATCAGGCTGCGCATCGCCGGGCATGCGCTTCGGCTATCACGGCGCTTGGC 28143 ||||| || || || || |||| || || || ||| | || ||||| || || ||| Sbjct 227 ATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCCGCAATCACCGCACTCGGC 286 Query 28144 AACCGAATTGGGCTGTACTCGGGGTCCACCCGCATCGGCACCGTGTATGCGGACACGACG 28203 |||||||| ||||| | | | || |||||||| | ||||||| || || ||||| || Sbjct 287 AACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACCGCCTACGCCGACACCACC 346 Query 28204 TGGGGCACGGCAACTGACGTGTCCGAGGGCGGTGTCGCCAAGGCGCAGGTGACCGGGTCG 28263 |||| ||| || || || |||| ||| ||| |||||| ||||| ||| Sbjct 347 TGGGCCACCCCAGTCGATGTCACCGAATCCGGCATCGACAAGGCATCATCCACCGGCTCG 406 Query 28264 GCGGTCACGATCACGATTCCTGCAGGCACGGTGTCGAACGGCACCGAGATTGACCGGTAC 28323 ||| || ||| || | |||| ||||| ||| | |||||||| | ||| |||||||| Sbjct 407 CTGGTAACCATCTCGGTACCTGGCGGCACCGTGGCCAACGGCACGGTGATCAACCGGTAC 466 Query 28324 GG 28325 || Sbjct 467 GG 468 >seq43894 Length=771 Score = 86.0 bits (94), Expect = 3e-12 Identities = 114/156 (73%), Gaps = 12/156 (8%) Strand=Plus/Plus Query 33512 GCCGCCCTGGATCTGGATGACGCCCTTGCGGAACGACACCCCGATCTCCTCGTAGGTGTG 33571 ||||||||| |||| ||| | || | ||||| || |||||||||| | || | | Sbjct 608 GCCGCCCTGAATCTCGATAGCCCCGTCGCGGATCGTTACCCCGATCTGAT----GGAGCG 663 Query 33572 TTCGGACGGCTTGCCCGTGGCCGAGAAGTACACCGTCTGGTAGCCGTAGTCGACCGGGAT 33631 | | || | ||| ||| ||||||||| || ||||| ||||||| |||| | ||||| Sbjct 664 TGCCCTCGCC--GCCGTTGGGCGAGAAGTAGACGGTCTGATAGCCGTTGTCGTCGGGGAT 721 Query 33632 GTAGATC---TTGTTCTCCCAGTCGCCGTACCAGAT 33664 ||||||| ||||| | |||| ||||||||||| Sbjct 722 GTAGATCGGATTGTTGT---AGTCCCCGTACCAGAT 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258771047007000