Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_021301.1 Length=56279 Score E Sequences producing significant alignments: (Bits) Value seq49917 782 0.0 seq50663 491 2e-134 seq38559 304 5e-78 seq43497 87.8 6e-13 >seq49917 Length=2087 Score = 782 bits (866), Expect = 0.0 Identities = 927/1251 (74%), Gaps = 9/1251 (1%) Strand=Plus/Plus Query 15044 CCCCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACC 15103 || || |||| |||||||||||||| || || ||||||| ||| | |||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15104 GCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCA 15163 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15164 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAAATACTACGTGATTTGG 15223 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15224 CCGTCGTGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGCGGTGTTCGTGTGGGCG 15283 ||| |||||||||| || || || ||||| | |||||||| | ||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15284 TTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15343 | | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15344 CTGGAGTTCATCAACAACGGCTTGTCGTT-----GAACCCGGATGTGCGGGCATGGTTCG 15398 ||||||||| ||||||||| | |||| | |||| || | ||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15399 GCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACCCGCATGC 15458 |||| | ||||| || | ||| || | | ||||||||| | || | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15459 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCGATGGTCG 15518 |||| ||||| |||||| |||||||| ||||| ||||||| ||||| ||| || Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15519 CGCGGACAGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAAGATGTGACCCAGTCGTAC 15577 | ||| || || ||||||||| | | | || ||||||| ||||| |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15578 GGTGTGGATACGCGCATGGATTTGTGGCTGCCGGGTGATCCGCAGCCTGACCGGTGGGCG 15637 |||||||| || |||||||| |||||| |||||||| ||||| || ||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15638 AACCTGGACCAACCGACCTACGTGTTCTCCACAGTGGACCGGTCGCAGATCACTGGCCCG 15697 ||||| || || ||||||||||| ||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15698 ACGAAAACGGTGCTGGATTCGGTGCTGCGCACCACGATTGACTTGGGCGGGTCGCTGGGG 15757 || ||||| || ||||||||| | || ||| ||| | ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15758 GACATCTTCAAACCTGTCATCAAGCAGGTCCCCGGCATGGATGGCGTGTTTTATGCGCCG 15817 ||||||||||| || |||||| ||||||| ||||| ||| | || ||||| || || || Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15818 GCGCTGGGTGTGGATTTTGAGCAGCCGTACGCGTATTTCGTGGCCCCTGAGCCGGGTGAG 15877 ||| ||||| ||||| |||||||| ||||| || |||| ||||| || ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 15878 GACACCGGCATCGATGCA-TGCACGATCACTGACCACACACCCGAGGGTTGGCAGCACAT 15936 ||| || |||| || | ||| ||| | |||||||| |||||||| ||||| ||||| Sbjct 906 GACTCCAACATC-ATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACAT 964 Query 15937 CATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCT 15996 ||| || || ||||| |||||||||||||||||| | |||||||||||||||||| || Sbjct 965 CATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTG 1024 Query 15997 AATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGG 16056 || | |||||||||||||| ||||| ||| ||||||| ||||| |||||| | ||||| Sbjct 1025 GATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGG 1084 Query 16057 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 16116 |||||||||||||||||||||||||||||| || | || ||| | ||| ||||| Sbjct 1085 ATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGA 1144 Query 16117 CGTTGGCCCGTACCACCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16176 || ||||| | || |||||||||||||||||||| ||||| ||| || |||||||| Sbjct 1145 GGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAA 1204 Query 16177 CATCGAAACGGTGTTCGCGTTCATCAACGCTTTGTTTGATTCACAGGGCAAGACGACGGC 16236 ||||||||| ||||||||||||||||||| | || ||| | || || || ||||| Sbjct 1205 CATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGC 1264 Query 16237 GACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTT 16287 | ||| ||||| ||||||| ||| ||||| || || || ||| |||| Sbjct 1265 GCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 491 bits (544), Expect = 2e-134 Identities = 476/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15776 ATCAAGCAGGTCCCCGGCATGGATGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTT 15835 || ||||| | |||||||||||| || |||||||| |||||| || |||||| | || Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15836 GAGCAGCCGTACGCGTATTTCGTGGCCCCTGAGCCGGGTGAGGACACCGGCATCGATGCA 15895 ||||| || ||||| ||| | || || || || | ||||||||| | |||| | Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 15896 TGCACGATCACTGACCACACACCCGAGGGTTGGCAGCACATCATTGGTGGGCGTTCCCCA 15955 ||| |||||| |||| || ||||||||||||||||||||||| ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 15956 AAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCTAATCGACTCGCTGATGATC 16015 ||||||||||||||| ||||||||||||| ||||| ||| | ||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16016 GTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGGGTTCCTGAACAACAGCTTC 16075 || ||||| ||| |||| || || || || ||| | || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16076 CTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGACGTTGGCCCGTACCACCCG 16135 ||||| |||||| | | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16136 GCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAACATCGAAACGGTGTTCGCG 16195 ||| ||||||| |||||||| || || ||||| || |||||||||||||| || |||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16196 TTCATCAACGCTTTGTTTGATTCACAGGGCAAGACGACGGCGACGGTGCAGTTCCGTAAC 16255 ||||||||||| | ||||||||||||||| | || || || || |||||| || Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16256 GGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 16314 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16315 CATGTCGCGTACCCGCATGGTGACTGACTACATCGAGAACGTGATGTGGCGGGTTACCCA 16374 || | | || ||| ||||| || ||||||||||||||||| |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16375 GGATGAGCG 16383 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 143 bits (158), Expect = 1e-29 Identities = 202/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 15332 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCTTGTCGTTGAACCCGGATGTGCGGGCA 15391 ||||| |||||| |||| ||| |||||||| | ||||||||||| || | || ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15392 TGGTTCGGCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACC 15451 ||||||||||| | |||| || || || ||||| ||||| | || | || | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15452 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCG 15511 |||||||| || || || |||||| || ||||| ||||| ||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15512 ATGGTCGCGCGGACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAAGATGTGACCCAG 15571 || || ||| || || ||||| |||||| | || ||||| ||||| || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 15572 TCGTACGGTGTGGATACGCGCATGGATTTGTGGCTGCCGGGTGA 15615 | |||||||| ||||| || |||||| |||||| ||| || || Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGCGGCCCGGGGA 1177 Score = 136 bits (150), Expect = 1e-27 Identities = 233/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 14930 TGCGACAAGTTTTGGCAGCCGATGGGCGCGGTTGGTGGCGATCTGATCGAGGCGTCGGGT 14989 |||| |||||| ||| || ||||| | || ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 14990 GCTGACCCGCGCAACGATGTGGAAACCGGCCGGATCGTACTCAAAGGGAACAGTCCCCTC 15049 | || || || || || |||| ||||||| | ||| || | || || ||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15050 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACCGCGGGT 15109 | | |||||||||||||| || |||||||| || | || ||||||||||| Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15110 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCATGGACC 15169 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15170 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAAATACTACGTGATTTGGCCGTCG 15229 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15230 TGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGC 15267 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 304 bits (336), Expect = 5e-78 Identities = 291/370 (79%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 15997 AATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGG 16056 |||||| ||||||||||||| ||||| ||| |||| || || || || ||| | || || Sbjct 388 AATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGG 447 Query 16057 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 16116 ||||||||||||||||||||||| |||||| | || || ||||||||||| || ||||| Sbjct 448 CTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGA 507 Query 16117 CGTTGGCCCGTACCACCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16176 || ||||| |||||||| ||| ||||||| |||||||| || || ||||| || ||||| Sbjct 508 AGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAA 567 Query 16177 CATCGAAACGGTGTTCGCGTTCATCAACGCTTTGTTTGATTCACAGGGCAAGACGACGGC 16236 ||||||||| || ||||||||||||||||| | ||||||||||||||| | || || || Sbjct 568 CATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGC 627 Query 16237 GACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGG 16296 || |||||| || |||| ||| || || ||||| | |||||||| ||||| Sbjct 628 ACAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGG 687 Query 16297 CCTGATGTCGCTGGTGT-TCATGTCGCGTACCCGCATGGTGACTGACTACATCGAGAACG 16355 |||||||| | || | || | | || ||| ||||| || |||||| ||||||||| Sbjct 688 ATTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACG 746 Query 16356 TGATGTGGCG 16365 | |||||||| Sbjct 747 TCATGTGGCG 756 Score = 154 bits (170), Expect = 5e-33 Identities = 198/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15608 CCGGGTGATCCGCAGCCTGACCGGTGGGCGAACCTGGACCAACCGACCTACGTGTTCTCC 15667 || |||||| |||||| || | |||| | ||| || ||||| || || || || || Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15668 ACAGTGGACCGGTCGCAGATCACTGGCCCGACGAAAACGGTGCTGGATTCGGTGCTGCGC 15727 || || ||||| || ||| ||||| || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15728 ACCACGATTGACTTGGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTC 15787 || | ||| |||| || ||||| || | |||||||| || ||||| ||||| ||| Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15788 CCCGGCATGGATGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTTGAGCAGCCGTAC 15847 ||||||||||| || ||||| || |||||| || |||||| | || ||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15848 GCGTATTTCGTGGCCCCTGAGCCGGGTGAGGAC 15880 || ||| | || || || || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq43497 Length=1050 Score = 87.8 bits (96), Expect = 6e-13 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 17413 CCGGAGTGGGCGCATGCGGTGCCGTCTGAGCCGGGTATTCACCCGGAGCAGTCGGCGTTG 17472 || || |||||||| ||| | ||||||| || | | || | ||||||| | | || Sbjct 42 CCCGAATGGGCGCAGGCGATCCCGTCTGCCCCAG---TCCATCAGGAGCAGCC--CAATG 96 Query 17473 CAGTGGCAGCGTCCGTTCACTGTTCAGCAGCTGCTTGAGATTGGTGAGCAGTTCATCGAG 17532 || || || |||||||| | |||||||| ||||| | ||||| ||| |||||||| Sbjct 97 AGCTGACA-CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAG 155 Query 17533 CAGTTTTTGGCGTGGGTGGTGCGCGCGGTAGCTGGGGTGTTCATCCCTGGTGAGGCGTCG 17592 ||||| || | | || || | || || | || |||||||| ||||| | ||| Sbjct 156 CAGTTCCTGCGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCG 215 Query 17593 TTCGATCAGTTGCGTGATTGGGCTTTGAACATCCCCAT 17630 ||||| ||| || || ||||| | | ||||||||| Sbjct 216 TTCGAGCAGCTGGAGGAATGGGCATACAGCATCCCCAT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179862739231500