Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_021302.1 Length=47109 Score E Sequences producing significant alignments: (Bits) Value seq46136 152 2e-32 seq42164 120 9e-23 seq45817 104 7e-18 >seq46136 Length=4795 Score = 152 bits (168), Expect = 2e-32 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 12106 TGGCAGCGGCTGTTCGGTACCCAGTTCGAGGATATGGGCGACGCGATCAACCACCTCGAT 12165 ||||| || || ||||| || |||| ||||| |||||||| || ||||| | ||||| Sbjct 800 TGGCAACGCCTTTTCGGCACGCAGTGGGAGGACATGGGCGATGCTGTCAACAAACTCGAC 741 Query 12166 CTCGACCCAGCCAAAAACGAGTTCGTCGACTTGCAGGGCACCTCGGACCGTGCGACCAAG 12225 |||||||| || |||||| ||||| || |||| | ||||||| | || |||| ||| Sbjct 740 CTCGACCCGGCTAAAAACCAGTTCAAGGATCTGCAAGACACCTCGCAGCGATCGACTAAG 681 Query 12226 ACGGCGACGGACAACTTCAAGTCCGACTGGGAGGAAGCGACCCGCACCGTCGGGCAGTTC 12285 || |||||||| | ||||||||||| |||||| || ||| || |||| || | Sbjct 680 ACCGCGACGGAGACGTTCAAGTCCGAGTGGGAGAGCGCAACCAAGACGGTCGATCAATGG 621 Query 12286 TTCTCGGACCTGAAAACCGATATCGCCGAGTGGTTCTCGGATCTGCCGGTGGTCCGTGAC 12345 ||| | ||||| || ||| |||| | || ||||| ||||||||| || || | ||| Sbjct 620 TTCACCGACCTAAAGACCAGTATCTCGGATTGGTTTGTGGATCTGCCTGTCATCAGGGAC 561 Query 12346 ATTCCTCAGTTCATCACTGACGTGTTC 12372 || || | | |||| ||| ||||| Sbjct 560 ATCCCGACGATGATCAAGGACCTGTTC 534 >seq42164 Length=289 Score = 120 bits (132), Expect = 9e-23 Identities = 141/186 (76%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 4259 TTCGATCTGTCGGTGTTCAACCATGCTGGGCGCTCGCAGGCGCCAGCGCCGCGAATCCCG 4318 ||||||||||||| |||| | |||| || ||| | ||||| ||||| ||||| ||| Sbjct 226 TTCGATCTGTCGGCGTTCCGCTATGCCGGACGCCAGTCCGCGCCTGCGCCACGAATTCCG 167 Query 4319 CAGGCGCACAACCGGACCCCTCAGCCAGTCGAGGCCGAGG-CAAGTGAAAGAGAGGAGCC 4377 | || ||||||| |||||||| ||| | ||| ||||| ||| | | || ||||||| Sbjct 166 CTGGTGCACAACAAGACCCCTCGGCCCGAGAAGGGCGAGGTCAACAG-AGGAAAGGAGCC 108 Query 4378 CACTGTGGGAACCCTGAGTGAGAGCGCGTTGC--AGAAGCTCGGTCTCGACGCCGACGCT 4435 || ||||| |||||||| | ||| || | || || ||||||| |||| |||||||| Sbjct 107 CATTGTGGCAACCCTGAAT--GAGGGCCTCGCCAAGCTGCTCGGTATCGATGCCGACGCC 50 Query 4436 GACGAC 4441 |||||| Sbjct 49 GACGAC 44 >seq45817 Length=532 Score = 104 bits (114), Expect = 7e-18 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 28205 CATCGTGTCCGAGTCGGGCATGTACGAGGTCGTCATCCGCTCGGACAAACCCGAGGCCGT 28264 |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 109 CATCGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGT 50 Query 28265 CGCGTTCCGCCGCTGGATCACCGGCACCGTCCTGCCCGAGATCCG 28309 || |||||| || | | || || || || |||||| ||||| Sbjct 49 CGAGTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150536423576500