Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_021538.1 Length=59626 Score E Sequences producing significant alignments: (Bits) Value seq49917 843 0.0 seq50663 500 3e-137 seq38559 302 2e-77 seq42881 116 1e-21 seq45035 107 7e-19 >seq49917 Length=2087 Score = 843 bits (934), Expect = 0.0 Identities = 942/1252 (75%), Gaps = 11/1252 (1%) Strand=Plus/Plus Query 16737 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACA 16796 || || |||| |||||||||||||| || || ||||||| ||| | ||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 16797 GCCGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTTCGAGTACCGCGACAGCGCA 16856 ||||| || | |||||||| ||| ||| || | ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 16857 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGG 16916 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 16917 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 16976 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 16977 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 17036 || | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 17037 CTGGAGTTCATCAACAACGGACTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 17091 ||||||||| ||||||||| ||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 17092 GCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACCCGCATGC 17151 ||||| | |||||||||| ||| ||| ||| ||||| ||| | ||| | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 17152 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTGG 17211 |||| ||||| |||||| |||||||| || | |||||||| ||||| ||| | Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 17212 CTCGCACAGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAGGACGTTACCCAGTCGTAC 17270 | || || || ||||||||| | | | || |||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 17271 GGTGTGGATACCCGCATGGATTTGTGGCTTCCAGGTGATCCGCAGCCTGACAGGTGGGCG 17330 |||||||| ||||||||||| |||||| || ||||| ||||| || |||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 17331 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGTCCG 17390 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 17391 ACGAAAACCGTGCTCGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 17450 || |||||||| |||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 17451 GACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCC 17510 ||||||||||| || |||||| ||||||| ||||| ||| |||| ||||| || || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 17511 GCGTTGGGTGTGGATTTCGAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAG 17570 | | ||||| |||||||||||||| |||||||| |||| |||||||| ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 17571 GACACCGGTATCGATGCGTGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACATT 17630 ||| || ||| ||| ||| | |||||||| || ||||| ||||| ||||| Sbjct 906 GACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATC 965 Query 17631 ATTGGTGGCCGTAGCCCAAAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTG 17690 || || |||||| |||||||||||||||||||| |||||||||||||||||| || | Sbjct 966 ATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTGG 1025 Query 17691 ATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 17750 || | |||||||||||||| || || ||| ||||||| ||||| |||||||| ||||| Sbjct 1026 ATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGGA 1085 Query 17751 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 17810 |||||||||||||||||||||||||||||| || | ||| ||| | ||| ||||| Sbjct 1086 TTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGAG 1145 Query 17811 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCG--CCGTACA 17868 || ||||| | ||||||||||||||||||||||| ||||| || ||||| ||||||| Sbjct 1146 GTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGC--CAGCGCCCCGTACA 1203 Query 17869 ACATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGG 17928 |||||||||| ||||||| ||||||||||| | || ||| | || || || |||| Sbjct 1204 ACATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGG 1263 Query 17929 CGACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTT 17980 || ||| ||||||||||||| ||| ||||| || || || ||| |||| Sbjct 1264 CGCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 500 bits (554), Expect = 3e-137 Identities = 478/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 17469 ATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTC 17528 || ||||| | |||||||||||||| |||||||| ||||| | |||||| | ||| Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 17529 GAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAGGACACCGGTATCGATGCG 17588 ||||| || ||||||||| | || || || || | ||||||||| | ||| || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 17589 TGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACATTATTGGTGGCCGTAGCCCA 17648 ||| |||||| |||| || || ||||||||||||||||| || |||||||||||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 17649 AAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTGATCGACTCGCTGATGATC 17708 ||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 17709 GTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 17768 || || || ||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 17769 CTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 17828 ||||| |||||| | | ||||| |||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 17829 GCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAACATCGAAACGGTGTTCGCA 17888 ||| ||||||| |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 17889 TTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGCAAC 17948 |||||||||||| | |||||||| |||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 17949 GGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 18007 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 18008 CATGTCACGTACCCGAATGGTGACTGACTACATCGAGAATGTGATGTGGCGGGTTTCCCA 18067 || | | || ||| ||||| || |||||||||||||| || |||||||| | | | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 18068 GGATGAGCG 18076 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 174 bits (192), Expect = 6e-39 Identities = 205/275 (75%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 17025 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGACTGTCGTTAAACCCGGATATCCGGGCA 17084 ||||| |||||| |||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 17085 TGGTTCGGCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACC 17144 |||||||||||| | |||||||||||| || || || |||||| | || | ||| | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 17145 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 17204 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 17205 ATG-GTGGCTCGCACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCA 17263 || ||| | | || || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAG-ACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCG 1132 Query 17264 GTCGTACGGTGTGGATACCCGCATGGATTTGTGGC 17298 | |||||||| |||||||| |||||| |||||| Sbjct 1133 AGCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 141 bits (156), Expect = 4e-29 Identities = 234/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 16623 TGCGACAAGTTTTGGCAGCCGATGGGCGCTGTCGGTGGCGACCTGATCGAGGCGTCGGGT 16682 |||| |||||| ||| || ||||| |||| ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 16683 GCTGACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAAGGGAACAGCCCTCTC 16742 | || || || || || |||| ||||||| | ||| || | ||||||||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 16743 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACAGCCGGT 16802 | | |||||||||||||| || |||||||| || | || ||||| || || Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 16803 TTGCGGTATGCGTTCTACACGAAGAACCACACCTTCGAGTACCGCGACAGCGCATGGACC 16862 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 16863 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGGCCGTCG 16922 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 16923 TGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 16960 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 302 bits (334), Expect = 2e-77 Identities = 290/369 (79%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 17691 ATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 17750 ||||| ||||||||||||| || || ||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 17751 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 17810 ||||||||||||||||||||||| |||||| | || ||||| |||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 17811 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAAC 17870 || ||||| ||||| || ||| ||||||| |||||||| || |||||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 17871 ATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCG 17930 |||||||| || ||||| |||||||||||| | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 17931 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGC 17990 || ||||||||| |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 17991 CTGATGTCGCTGGTGT-TCATGTCACGTACCCGAATGGTGACTGACTACATCGAGAATGT 18049 |||||||| | || | || | | || ||| ||||| || |||||| ||||||| || Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 18050 GATGTGGCG 18058 |||||||| Sbjct 748 CATGTGGCG 756 Score = 145 bits (160), Expect = 3e-30 Identities = 196/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 17301 CCAGGTGATCCGCAGCCTGACAGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 17360 || |||||| |||||| || |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 17361 ACAGTGGACCGGTCGCAGATCACTGGTCCGACGAAAACCGTGCTCGATTCGGTGCTGCGC 17420 || || ||||| || ||| || || || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 17421 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 17480 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 17481 CCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTCGAGCAGCCATAC 17540 |||||||||||||| ||||| || ||||| | |||||| | |||||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 17541 GCCTATTTCGTGGCCCCCGAGCCGGGTGAGGAC 17573 |||||| | || || || || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq42881 Length=1721 Score = 116 bits (128), Expect = 1e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 12011 TGGGGCAGATCGGCGCCAAGCTTGATCAGGATTTCGGTATCTCGAAGGGTTTGGCGGGGA 12070 ||||| |||| ||||||||||| ||| || ||||| ||| ||||| | | || Sbjct 1488 TGGGGGAGATTGGCGCCAAGCTGGATGCCGACTTCGGCGCCTCCAAGGGCCTCGGTGGAC 1547 Query 12071 TCGCGGAGAACATCACGAAGTTCGTGGCGAACCTTGCCGCCGCACCGTTGTTGGGGCAGT 12130 | || ||||| | ||||||||||| ||||| || || ||| ||| || | |||||| Sbjct 1548 TTGCCGAGAATCTAACGAAGTTCGTCGCGAATCTCGCGTTCGCGCCGATGCTTGGGCAGC 1607 Query 12131 TGCAG-GCCATTTCGGCCTATAACCCGACCCAGGGCGGGCACGGGTTGATGGGTGTCCTT 12189 | ||| || || ||| ||||| || ||||||| ||||| ||||||| |||| Sbjct 1608 T-CAGCGCTATAAGCGCCGCCAACCCCTCCAAGGGCGGATACGGGATGATGGGCATCCTC 1666 Query 12190 GGGGCGCAGGGAGTGTTCGGCCCGCAGT 12217 ||||||||||| || ||||| ||||||| Sbjct 1667 GGGGCGCAGGGTGTATTCGGGCCGCAGT 1694 >seq45035 Length=256 Score = 107 bits (118), Expect = 7e-19 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 16017 TATGACGGTCCCGGCGCGGATGAGTATGTGGAGTTTGGTCCGCTGCTGCCCAATCAGATT 16076 || ||||| |||||| |||| | ||||| || || || |||||||| ||||||||| | Sbjct 59 TACGACGGGCCCGGCTCGGACCAATATGTCGAATTCGGGCCGCTGCTACCCAATCAGGTG 118 Query 16077 GTGTTCCTACGTACCGACCCGCGCTCACAGACGACGTTGGTGCAGGATTTGACGTCGGTG 16136 ||||| | || ||||| |||||| || || || |||||| | || | || |||||| Sbjct 119 GTGTTTTTGCGCACCGATCCGCGCGTGCACACCACCTTGGTGAAAGACCTAACCTCGGTG 178 Query 16137 CCGCCGTCGCCGCAGGAGTTGAACATTTTCCAGCAGGCG 16175 ||||| || |||||||| | | | |||||| ||||| Sbjct 179 CCGCCCTCACCGCAGGAACTCGATTTGTTCCAGGAGGCG 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190566684542000