Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_022057.1 Length=72108 Score E Sequences producing significant alignments: (Bits) Value seq49917 324 6e-84 seq50663 230 1e-55 seq38559 140 1e-28 >seq49917 Length=2087 Score = 324 bits (358), Expect = 6e-84 Identities = 722/1080 (67%), Gaps = 54/1080 (5%) Strand=Plus/Plus Query 33917 GGCGCGTGGGTGGGCACCGCGCAGCTGCTCGGCATCTACGACATCCTCAACTACATCGTC 33976 ||||||||| |||| | || ||| |||||| | |||||||| |||||| ||| Sbjct 181 GGCGCGTGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTG 240 Query 33977 ATCTGGCCGACGTGGTGGCTGCCGCTGGCCGCGCAGCCGTTCTCCCATGCCATCTACATC 34036 |||||||||||||||||||| || || ||||| ||||| | || || || |||| |||| Sbjct 241 ATCTGGCCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATC 300 Query 34037 GGCGGGCTGTGCACCTGCATCGAAGCGATGATCATGGAGAACTCGCTGCGGCTCCAGTC- 34095 | | ||| |||||| | || ||| || || | ||||||| ||||||| Sbjct 301 TGGGCGCTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCC 360 Query 34096 GGGCATCTGGGAGTTCATCAACAACGTGGTGTCGCTC-----AACCCTGACATGCGCGCC 34150 ||| |||| ||||| ||||||||| |||| ||| ||| ||||| || || Sbjct 361 GGGTGGCTGG-AGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCA 419 Query 34151 TGGATTGGCACGCTGCTTCAGTCG---AACGGCAACAT---------------CTTCGAC 34192 ||||| ||||| | | || | || || ||| ||||| | Sbjct 420 TGGATGGGCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGC 479 Query 34193 A---TGCTGAAGACGCCCATCTACGTGGTGCGCACCAACCCGCTGCTCGATACGAGTCCG 34249 | ||||| || |||| ||| ||| ||||||||||||| | || || || || Sbjct 480 AAGATGCTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCC 539 Query 34250 CTGGTCGCGCGCACGGTGCGGATGGAGACGTGCGGCGCTGTCATCGACGACATCACCCGC 34309 || ||| || || || ||||| || ||||| | |||||| | || |||||||| Sbjct 540 ATGTGCGCCAAGACCGTTCGCATGGAAACCTGCGGAACGGTCATCAAGGATGTCACCCGC 599 Query 34310 GCCTACGGGGTGACGGTGAGCGTGGACCTGTGGCTGCCGGGCGACGAGCAGCCGGACTAC 34369 |||||||| ||| || |||||||||||| ||||| ||| ||| |||||| | Sbjct 600 GCCTACGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAG 659 Query 34370 TGGACCAAGAACTTCGCGTCGATGCGGCTCACCCAGCCGACGTACGTGGTGACCGTCAAG 34429 ||| |||| | ||||| || | |||| |||||| | || | | Sbjct 660 TGGGCCAA--------CCTCGATTCGCC-CACC---------TACGTGTTTTCCACCCGG 701 Query 34430 GACCGCTCGCGGATCACCGGCCCGACCGGCACGGTGATCGACTCGGCGGTGCGTCAGGTG 34489 |||||| || |||| | || || ||| || || ||| |||| | | |||| Sbjct 702 GACCGCCAGCAGATCTCGGGGCCCACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTG 761 Query 34490 GTCGACGTGGCCGGGTCGTTCTTTGGTGACCTGCT---GCCGATCATTCAGAAGGTGCCA 34546 ||||| | | ||| || || |||||| | | ||| |||| ||| |||| || Sbjct 762 ATCGACCTCGGCGGATCACTC---GGTGACATCTTCAAGCCAGTCATCCAGCAGGTACCC 818 Query 34547 GGTCGCGACGGGGTGTACATCTCCGAGCAGCTGGGCGTCGACTACGTGGGGCCGTGGGCA 34606 ||| ||||||||| | | || |||| || ||||| | || | ||| | || Sbjct 819 GGTATGAACGGGGTGTTCTACGCCCCCAAGCTCGGTGTCGATTTCGAGCAGCCCTACGC- 877 Query 34607 CTGC-TGATCGCGCCCGAGCCGGGGGAGAAGGGCAACGTCGTCACCTGCCGGATCAGCTT 34665 || | | |||| ||||| ||| ||| | |||| || ||| |||| ||| | Sbjct 878 CTACGTCGTCGCCCCCGAAGAGGGCGAGGACTCCAACATCATCAACTGCGAAATCGCCGA 937 Query 34666 CCACACGCCGAAGGGCTGGCAGCACATCATCGGCGGTCGCAGCCCGAAGTGGCTCAACGA 34725 |||||| || |||||||||| |||||||||||||| || || |||||| | ||||| Sbjct 938 CCACACCCCCGAGGGCTGGCAACACATCATCGGCGGCCGTTCTCCAAAGTGGTTGAACGA 997 Query 34726 CCTGATGAACGCGACGTTCTCCTGGATGATCGACGCGCTCTCGATCCTGATCGGTTTCAC 34785 | | ||||| || || ||| | || ||| | |||| |||| || |||| ||| | Sbjct 998 CTTAATGAATGCCACCTTCGCAGGGTGGATGTATTCGCTGATGATCGTGGTCGGGTTCTC 1057 Query 34786 TGGAATCCCCAGCAACCTGCTGGAGGGGTTCATGAACAACACCCTGCTGGCGTTCCAGCT 34845 || ||||| | ||||| ||| ||| ||||||||| | | |||||||||||| | Sbjct 1058 CGGCATCCCGTCGGATCTGCTCTCGGGATTCCTGAACAACAGCTTCCTGGCGTTCCAGAT 1117 Query 34846 GGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCCTGGCATCGAGGTGTT 34905 ||| ||| ||| | ||| ||||||| ||||| | ||| || | |||||| ||| Sbjct 1118 GGTCCAGGTGTACCAGGTCCGCGACGAGGTGGGCCCTTTTCATCCGGCGATCGAGCGGTT 1177 Query 34906 CCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGGCTTCATCAACGCCAT 34965 | || |||| ||||||||||||||||||||||| || |||||| ||||||||||| || Sbjct 1178 CTACCCGACCGCCAGCGCCCCGTACAACATCGAAACCATGTTCGCGTTCATCAACGCGAT 1237 >seq50663 Length=1982 Score = 230 bits (254), Expect = 1e-55 Identities = 326/456 (71%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 34652 TGCCGGATCAGCTTCCACACGCCGAAGGGCTGGCAGCACATCATCGGCGGTCGCAGCCCG 34711 |||||||||| | ||| || || |||| ||||||||||||||||| || || ||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 34712 AAGTGGCTCAACGACCTGATGAACGCGACGTTCTCCTGGATGATCGACGCGCTCTCGATC 34771 |||||| | |||||| ||||||| || |||||| | ||| ||||||| |||| |||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 34772 CTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGGGTTCATGAACAACACCCT 34830 || |||| ||| | || ||||| | || ||||||| || ||| ||||||||| | | Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTT 1628 Query 34831 GCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCC 34890 ||||| |||||||| ||||| |||||| || ||| |||| |||||||| || ||||| Sbjct 1629 CCTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCC 1688 Query 34891 TGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGG 34950 | ||||| ||| | | || || ||||| ||||||||||| || || |||| Sbjct 1689 AGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGC 1748 Query 34951 CTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGCGATCGTGACGTTCCGCAA 35010 |||||||||||| | | ||||| | |||| | || || ||||||||||| Sbjct 1749 GTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAA 1808 Query 35011 CGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGGGCTGATCTCTCTTCTTTA 35070 || || ||| || | || | || || ||||||||||| |||| || | | || Sbjct 1809 TGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTA 1868 Query 35071 CATGGAGAGGACGCGAATCTTCACCGACTACATCGA 35106 | | | || || |||||||||||||||| Sbjct 1869 CCACGGCCGAACCAAGATGGTCACCGACTACATCGA 1904 >seq38559 Length=768 Score = 140 bits (154), Expect = 1e-28 Identities = 218/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 34754 ATCGACGCGCTCTCGATCCTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGG 34812 ||||| ||||| |||| || |||| ||| | || ||||| | || ||||||| || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGG 447 Query 34813 GTTCATGAACAACACCCTGCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGA 34872 ||| ||||||||| | | ||||| |||||||| ||||| |||||| || ||| |||| Sbjct 448 CTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGA 507 Query 34873 GGTCGGCCCGTATCACCCTGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAA 34932 |||||||| || ||||| | ||||| ||| | | || || ||||| ||||| Sbjct 508 AGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAA 567 Query 34933 CATCGAGACGGTGTTCGGCTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGC 34992 |||||| || || |||| |||||||||||| | | ||||| | |||| | || Sbjct 568 CATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGC 627 Query 34993 GATCGTGACGTTCCGCAACGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGG 35052 || ||||||||||| || || ||| || | || | || || ||||||||||| Sbjct 628 ACAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGG 687 Query 35053 GCTGATCTC 35061 |||| || Sbjct 688 ATTGATGTC 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230478157431750