Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_022069.1 Length=55213 Score E Sequences producing significant alignments: (Bits) Value seq39852 114 5e-21 >seq39852 Length=3441 Score = 114 bits (126), Expect = 5e-21 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 36470 ACTACCACCTGTCACGCTTCGCCTGCTACCTCGTCGCGATGAACGGGGATCCGCGCAAGC 36529 |||||||||| || || | ||||||||| |||||||| | || || ||||| ||||||| Sbjct 1328 ACTACCACCTCTCCCGGTACGCCTGCTATCTCGTCGCACTCAATGGCGATCCACGCAAGC 1387 Query 36530 CTGAGGTCGCTGCCGCACAGGCATACTTCGCGATCCGCACCCGTGACGCCGAGACCGC 36587 |||| |||| ||||| ||| ||||||||| ||| |||||||| ||||||||||| Sbjct 1388 CTGAAATCGCAGCCGCGCAGACATACTTCGTCATCAAGACCCGTGAGGCCGAGACCGC 1445 Score = 100 bits (110), Expect = 1e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 36256 TCACCGTTCGACGCCATCAGGCGGTCGACCACGGAGGGCCGCGAGTATTGGTCGGCCCGG 36315 || ||||||||||| ||| | | ||| |||||||||||||| |||||||| || Sbjct 1119 TCCCCGTTCGACGCGATCCGTCACCTGACTGACGAGGGCCGCGAGTACTGGTCGGCACGT 1178 Query 36316 GAACTCATGCCGCTACTCGGGTATGACAAGTGGGAGCGGTTCGACGGCGC 36365 || ||||||||||| ||||| || || |||||||||||||||| || ||| Sbjct 1179 GATCTCATGCCGCTGCTCGGATACGAGAAGTGGGAGCGGTTCGCCGACGC 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176453595012500