Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_022086.1 Length=50690 Score E Sequences producing significant alignments: (Bits) Value seq46163 93.3 1e-14 >seq46163 Length=1271 Score = 93.3 bits (102), Expect = 1e-14 Identities = 302/459 (66%), Gaps = 40/459 (9%) Strand=Plus/Plus Query 4428 ATCGAAAGGCAG---AC---ATGAGCTTCCGCACTGCTTATGGCAATGCGTACTCCGAGA 4481 ||||||||| || || ||||| |||||||| || || |||||| || ||||||| Sbjct 707 ATCGAAAGGAAGTACACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGA 766 Query 4482 ACGGTTGGCGTATGTGCAACCGTGATGAGTGCGTGA-CG-----GTCTCCGGACCGTA-- 4533 |||||||||||||||||||||| || || |||| | || || || | ||| Sbjct 767 ACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACC 826 Query 4534 -CATGAACACCGCACCGCTACGGCGTGGTCCTGCCG-AGAAGCTCCTCGGAG---AGTTC 4588 | | | ||||||||||| | || || | ||| || ||||||| | | | Sbjct 827 TCGTCGATACCGCACCGCTGC-GCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTG 885 Query 4589 GTCAGGCGCTACCACCAGGTGTGCGCCCCGGTCGTGTCCCCGGTGTGGGGCTGGTCGGAG 4648 | || ||| | | || || | || ||||| |||||||| ||||| | Sbjct 886 TACTGGTATGACCGCAACGT---CGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCC 942 Query 4649 ACGAACGATG-TGGGCAACTCGAATCACCTGTCGGGCACCGCAGTTGACGTCAACGCACC 4707 || ||||||| | | |||| ||||||||| | |||||||| |||||||| | ||||| Sbjct 943 ACTAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACC 1002 Query 4708 GCAGTGGCCTTGG----GGCCTTCGCAAGATGCC----CGCTGACCTGGTTGCGCGGATC 4759 ||| || ||| || || |||||| ||| | || | | ||| Sbjct 1003 CAAGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAGGCCAAGGTCCGC----- 1057 Query 4760 AACGTGCTGCTGGACCAGTTCGAGGGTGCGATCTACTGGGGTCGCAACTGGAACCGTCCG 4819 | | || |||| | ||||||||| || | | |||||| ||| ||||| || || Sbjct 1058 -AAGGGC--CTGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCC 1114 Query 4820 GACGAGATGCACTTCCAGCTCAACTGGCGGGAGGGTGAC 4858 ||||||||||||| |||| | ||||| ||||| ||| Sbjct 1115 GACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCGAC 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161988717618000