Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_022325.1 Length=69815 Score E Sequences producing significant alignments: (Bits) Value seq49917 329 1e-85 seq50663 224 4e-54 seq38559 140 1e-28 >seq49917 Length=2087 Score = 329 bits (364), Expect = 1e-85 Identities = 722/1080 (67%), Gaps = 54/1080 (5%) Strand=Plus/Plus Query 33962 GGCGCGTGGGTGGGCACCGCGCAGCTGCTCGGCATCTACGACATCCTCAACTACATCGTC 34021 ||||||||| |||| | || ||| |||||| | |||||||| |||||| ||| Sbjct 181 GGCGCGTGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTG 240 Query 34022 ATCTGGCCGACGTGGTGGCTGCCGCTGGCCGCGCAGCCGTTCTCCCACGCCATCTACATC 34081 |||||||||||||||||||| || || ||||| ||||| | || ||||| |||| |||| Sbjct 241 ATCTGGCCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATC 300 Query 34082 GGCGGGCTGTGCACCTGCATCGAAGCGATGATCATGGAGAACTCGCTGCGGCTCCAGTC- 34140 | | ||| |||||| | || ||| || || | ||||||| ||||||| Sbjct 301 TGGGCGCTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCC 360 Query 34141 GGGCATCTGGGAGTTCGTCAACAACGTGGTGTCGCTC-----AACCCTGACATGCGCGCC 34195 ||| |||| ||||||||||||||| |||| ||| ||| ||||| || || Sbjct 361 GGGTGGCTGG-AGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCA 419 Query 34196 TGGATTGGCACGCTGCTTCAGTCG---AACGGCAACAT---------------CTTCGAC 34237 ||||| ||||| | | || | || || ||| ||||| | Sbjct 420 TGGATGGGCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGC 479 Query 34238 A---TGCTGAAGACGCCCATCTACGTGGTGCGTACCAACCCGCTGCTCGATACGAGTCCG 34294 | ||||| || |||| ||| ||| ||| ||||||||| | || || || || Sbjct 480 AAGATGCTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCC 539 Query 34295 TTGGTCGCGCGCACGGTGCGGATGGAGACGTGCGGCGCTGTCATCGACGACATCACCCGC 34354 || ||| || || || ||||| || ||||| | |||||| | || |||||||| Sbjct 540 ATGTGCGCCAAGACCGTTCGCATGGAAACCTGCGGAACGGTCATCAAGGATGTCACCCGC 599 Query 34355 GCCTACGGGGTGACGGTGAGCGTGGACCTGTGGCTGCCGGGCGACGAGCAGCCGGACTAC 34414 |||||||| ||| || |||||||||||| ||||| ||| ||| |||||| | Sbjct 600 GCCTACGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAG 659 Query 34415 TGGACCAAGAACTTCGCGTCGATGCGGCTCACTCAGCCGACGTACGTGGTGACCGTCAAG 34474 ||| |||| | ||||| || || || |||||| | || | | Sbjct 660 TGGGCCAA--------CCTCGATTCG----------CCCACCTACGTGTTTTCCACCCGG 701 Query 34475 GACCGCTCGCGGATCACCGGCCCGACCGGCACGGTGATCGACTCGGCGGTGCGTCAGGTG 34534 |||||| || |||| | || || ||| || || ||| |||| | | |||| Sbjct 702 GACCGCCAGCAGATCTCGGGGCCCACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTG 761 Query 34535 GTCGACGTGGCCGGGTCGTTCTTTGGTGACCTGCT---GCCGATCATTCAGAAGGTGCCA 34591 ||||| | | ||| || || |||||| | | ||| |||| ||| |||| || Sbjct 762 ATCGACCTCGGCGGATCACTC---GGTGACATCTTCAAGCCAGTCATCCAGCAGGTACCC 818 Query 34592 GGTCGTGACGGGGTGTACATCTCCGAGCAGCTGGGCGTCGACTACGTGGGGCCGTGGGCA 34651 ||| ||||||||| | | || |||| || ||||| | || | ||| | || Sbjct 819 GGTATGAACGGGGTGTTCTACGCCCCCAAGCTCGGTGTCGATTTCGAGCAGCCCTACGC- 877 Query 34652 CTGC-TGATCGCGCCCGAGCCGGGGGAGAAGGGCAACGTCGTCACCTGCCGGATCAGCTT 34710 || | | |||| ||||| ||| ||| | |||| || ||| |||| ||| | Sbjct 878 CTACGTCGTCGCCCCCGAAGAGGGCGAGGACTCCAACATCATCAACTGCGAAATCGCCGA 937 Query 34711 CCACACGCCGAAGGGCTGGCAGCACATCATCGGCGGTCGCAGCCCGAAGTGGCTCAACGA 34770 |||||| || |||||||||| |||||||||||||| || || |||||| | ||||| Sbjct 938 CCACACCCCCGAGGGCTGGCAACACATCATCGGCGGCCGTTCTCCAAAGTGGTTGAACGA 997 Query 34771 CCTGATGAACGCGACATTCTCCTGGATGATCGACGCGCTCTCGATCCTGATCGGTTTCAC 34830 | | ||||| || || ||| | || ||| | |||| |||| || |||| ||| | Sbjct 998 CTTAATGAATGCCACCTTCGCAGGGTGGATGTATTCGCTGATGATCGTGGTCGGGTTCTC 1057 Query 34831 TGGAATCCCCAGCAACCTGCTGGAGGGGTTCATGAACAACACCCTGCTGGCGTTCCAGCT 34890 || ||||| | ||||| ||| ||| ||||||||| | | |||||||||||| | Sbjct 1058 CGGCATCCCGTCGGATCTGCTCTCGGGATTCCTGAACAACAGCTTCCTGGCGTTCCAGAT 1117 Query 34891 GGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCCTGGCATCGAGGTGTT 34950 ||| ||| ||| | ||| ||||||| ||||| | ||| || | |||||| ||| Sbjct 1118 GGTCCAGGTGTACCAGGTCCGCGACGAGGTGGGCCCTTTTCATCCGGCGATCGAGCGGTT 1177 Query 34951 CCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGGCTTCATCAACGCCAT 35010 | || |||| ||||||||||||||||||||||| || |||||| ||||||||||| || Sbjct 1178 CTACCCGACCGCCAGCGCCCCGTACAACATCGAAACCATGTTCGCGTTCATCAACGCGAT 1237 >seq50663 Length=1982 Score = 224 bits (248), Expect = 4e-54 Identities = 325/456 (71%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 34697 TGCCGGATCAGCTTCCACACGCCGAAGGGCTGGCAGCACATCATCGGCGGTCGCAGCCCG 34756 |||||||||| | ||| || || |||| ||||||||||||||||| || || ||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 34757 AAGTGGCTCAACGACCTGATGAACGCGACATTCTCCTGGATGATCGACGCGCTCTCGATC 34816 |||||| | |||||| ||||||| || || ||| | ||| ||||||| |||| |||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 34817 CTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGGGTTCATGAACAACACCCT 34875 || |||| ||| | || ||||| | || ||||||| || ||| ||||||||| | | Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTT 1628 Query 34876 GCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCC 34935 ||||| |||||||| ||||| |||||| || ||| |||| |||||||| || ||||| Sbjct 1629 CCTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCC 1688 Query 34936 TGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGG 34995 | ||||| ||| | | || || ||||| ||||||||||| || || |||| Sbjct 1689 AGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGC 1748 Query 34996 CTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGCGATCGTGACGTTCCGCAA 35055 |||||||||||| | | ||||| | |||| | || || ||||||||||| Sbjct 1749 GTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAA 1808 Query 35056 CGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGGGCTGATCTCTCTTCTTTA 35115 || || ||| || | || | || || ||||||||||| |||| || | | || Sbjct 1809 TGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTA 1868 Query 35116 CATGGAGAGGACGCGAATCTTCACCGACTACATCGA 35151 | | | || || |||||||||||||||| Sbjct 1869 CCACGGCCGAACCAAGATGGTCACCGACTACATCGA 1904 >seq38559 Length=768 Score = 140 bits (154), Expect = 1e-28 Identities = 218/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 34799 ATCGACGCGCTCTCGATCCTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGG 34857 ||||| ||||| |||| || |||| ||| | || ||||| | || ||||||| || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGG 447 Query 34858 GTTCATGAACAACACCCTGCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGA 34917 ||| ||||||||| | | ||||| |||||||| ||||| |||||| || ||| |||| Sbjct 448 CTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGA 507 Query 34918 GGTCGGCCCGTATCACCCTGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAA 34977 |||||||| || ||||| | ||||| ||| | | || || ||||| ||||| Sbjct 508 AGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAA 567 Query 34978 CATCGAGACGGTGTTCGGCTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGC 35037 |||||| || || |||| |||||||||||| | | ||||| | |||| | || Sbjct 568 CATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGC 627 Query 35038 GATCGTGACGTTCCGCAACGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGG 35097 || ||||||||||| || || ||| || | || | || || ||||||||||| Sbjct 628 ACAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGG 687 Query 35098 GCTGATCTC 35106 |||| || Sbjct 688 ATTGATGTC 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223145095852000