Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_022753.1 Length=52282 Score E Sequences producing significant alignments: (Bits) Value seq46163 248 3e-61 >seq46163 Length=1271 Score = 248 bits (274), Expect = 3e-61 Identities = 244/310 (79%), Gaps = 9/310 (3%) Strand=Plus/Plus Query 4145 ATCGAAAGGAA---CAC---ATGAGCTTTCGCAACGTATACGGCTACGACTG-GTCGGAA 4197 ||||||||||| ||| ||||| || |||| || ||||||| | || | ||| || Sbjct 707 ATCGAAAGGAAGTACACCCGATGAGTTTCCGCACCGCATACGGCAAT-ACGGTGTCCGAG 765 Query 4198 AACGGCTGGCGGATGTGCAACCGCGACGAGTGCGACATCGTCCGCATTCCTGAGCTGTAC 4257 ||||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||| Sbjct 766 AACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTAC 825 Query 4258 CTGACCGAGACCGCCCCGATCCGCAAGGGCGCACCGCTGACCATCCTCGGCGCGTGGATG 4317 || ||| ||||| ||| | ||||||||||| |||||||||||||||||||| ||| || Sbjct 826 CTCGTCGATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTG 885 Query 4318 TACTGGTATGACCGCAACGTCGAGGAGATCCTGACCTCGATCTGGGGCTGGTCGGCAGGC 4377 ||||||||||||||||||||||| |||||| || | | ||||| ||||| || Sbjct 886 TACTGGTATGACCGCAACGTCGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCCACT 945 Query 4378 AACGACGTT-GCCAACTCGAATCACCTGAGCGGCACCGCAATTGACCTGTGCGCGCCCAA 4436 ||||| ||| |||||| ||||||||| |||||||| ||||| || || ||||| Sbjct 946 AACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAA 1005 Query 4437 GTACCCCTGG 4446 |||||||||| Sbjct 1006 GTACCCCTGG 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167080047446000