Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_022973.1 Length=50755 Score E Sequences producing significant alignments: (Bits) Value seq46163 120 1e-22 >seq46163 Length=1271 Score = 120 bits (132), Expect = 1e-22 Identities = 312/465 (67%), Gaps = 52/465 (11%) Strand=Plus/Plus Query 4248 ATCGAAAGGCAG---AC---ATGAGCTTCCGCACTGCTTATGGCAATGCGTACTCCGAGA 4301 ||||||||| || || ||||| |||||||| || || |||||| || ||||||| Sbjct 707 ATCGAAAGGAAGTACACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGA 766 Query 4302 ACGGTTGGCGTATGTGCAACCGCGACGAGTGCGTGACGGTC----TC--CGGACCGTACA 4355 |||||||||||||||||||||| ||||| |||| | || || || | |||| Sbjct 767 ACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACC 826 Query 4356 TGGAC---ACCGCACCGCTCCGACGTGGCGCTGCCGAGAAGCTCCTCGGAGAGTTCGTCA 4412 | | | ||||||||||| || ||||| | || ||||||| || | Sbjct 827 TCGTCGATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGG------CGCCT 880 Query 4413 GGCGCTACCACCAGGTGTG--CGCCCCGGTCGTA---------TCCCCCGTATGGGGCTG 4461 ||| ||| ||| || ||| || ||| | |||||||| ||||| || Sbjct 881 GGCTGTACT----GGTATGACCGCAACG-TCGAAGAGATCACCTCCCCCGTGTGGGGGTG 935 Query 4462 GTCGGAGACGAACGACGTAGGC-AACTCGAATCACCTGTCAGGCACGGCAGTCGACATCA 4520 ||| | || ||||| || || ||| ||||||||| ||||||| || || ||| | | Sbjct 936 GTCTGCCACTAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGA 995 Query 4521 ACGCTCCGCAGTGGCCGTGGG---GCTACCGGACG-ATGCCAGCCGCGCTGGTTGCCAAG 4576 || || ||| || ||| | ||| || | ||||| ||| ||| || ||||| Sbjct 996 TGGCACCCAAGTACCCCTGGCAGCGGTACACGATGGATGCC-GCCACGCAGG---CCAAG 1051 Query 4577 ATC---AACGTCCTGCTGGACCAGTTCGAGGGAGCCATCTACTGGGGCCGCAACTGGAAT 4633 || || | |||| | | ||||||||| | | | |||||||||| ||||| Sbjct 1052 GTCCGCAAGGGCCTGGCG---CTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCG 1108 Query 4634 CGCCCCGACGAGATGCACTTCCAGCTCAACTGGGCTGAAGGCGAC 4678 ||||||||||||||||||| |||| | |||| | || |||||| Sbjct 1109 CGCCCCGACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCGAC 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162196592265500