Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_022984.1 Length=51319 Score E Sequences producing significant alignments: (Bits) Value seq46163 95.1 4e-15 >seq46163 Length=1271 Score = 95.1 bits (104), Expect = 4e-15 Identities = 170/242 (70%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 4736 TCTCCGGTGTGGGGCTGGTCGGAGACGAACGACGT-CGGCAACTCGAATCACCTGTCGGG 4794 || || |||||||| ||||| | || ||||| || || |||| ||||||||| | || Sbjct 919 TCCCCCGTGTGGGGGTGGTCTGCCACTAACGATGTTCGCCAACAGTAATCACCTGGCAGG 978 Query 4795 CACTGCAGTTGACATCAACGCTCCGCAGTGGCCGTGGG---GCTACCGGACG-ATGCCAG 4850 ||| || |||||| | | || || ||| || ||| | ||| || | ||||| | Sbjct 979 CACCGCTGTTGACGTGATGGCACCCAAGTACCCCTGGCAGCGGTACACGATGGATGCC-G 1037 Query 4851 CCGCGCTGGTTGCCAAGATC---AACGTCCTGCTGGACCAGTTCGAGGGAGCCATCTACT 4907 || ||| || ||||| || || | |||| | | ||||||||| | | | || Sbjct 1038 CCACGCAGG---CCAAGGTCCGCAAGGGCCTGGCG---CTGTTCGAGGGCTCGGTGTTCT 1091 Query 4908 GGGGCCGCAACTGGAATCGCCCCGACGAGATGCACTTCCAGCTCAACTGGGCTGAAGGCG 4967 |||||||| ||||| ||||||||||||||||||| |||| | |||| | || |||| Sbjct 1092 GGGGCCGCGACTGGTCGCGCCCCGACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCG 1151 Query 4968 AC 4969 || Sbjct 1152 AC 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164000304591500