Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq472 91.5 1e-13 seq436 91.5 1e-13 seq5 91.5 1e-13 seq46174 89.7 4e-13 seq338 84.2 2e-11 >seq472 Length=1492349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| || ||||| | ||||| || ||||| ||| |||| || | Sbjct 1223055 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 1223114 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || || ||||| |||| | || ||| Sbjct 1223115 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGAAATTCCTTCCGAT 1223174 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| |||| ||| || |||||| |||| |||| || || | |||||| Sbjct 1223175 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGACGGGCGTACTTTGTCTGACTAC 1223234 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| ||| | || | ||||||||| | || || || Sbjct 1223235 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTTCGTGGTGG 1223284 >seq436 Length=2687165 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| || ||| | || ||||| ||||| ||| |||| ||| | Sbjct 806822 AAAATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCC 806763 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || | | | || || ||||| |||||||||||| | || || Sbjct 806762 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAC 806703 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || |||||||| || | | || | | |||||| Sbjct 806702 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 806643 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || |||||||| ||||| |||| || | || |||| || Sbjct 806642 AACATTCAGAAAGAGTCTACTCTGCACCTGGTCCTGCGCCTGAGAGGTGG 806593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| |||| |||| | | Sbjct 806591 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 806532 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| |||||||||||| | || |||||| Sbjct 806531 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGATCAG 806472 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || | | ||||||||| Sbjct 806471 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 806412 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| ||||| |||| Sbjct 806411 ATTCAGAAAGAGTCTACTCTGCACCTGGT 806383 >seq5 Length=157846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| | ||||| | ||||| || ||||||||| |||| || | Sbjct 1047 AAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCG 1106 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || || ||||| |||||| | | ||| Sbjct 1107 TCAGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGCCTCCT----GAT 1162 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| |||| ||| || |||||| |||| || | || || | |||||| Sbjct 1163 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 1222 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 ||||| ||||||||||| ||| | || | ||||||||| | || || || ||| ||| Sbjct 1223 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTCCGTGGTGGTGCTAAGAAA 1282 Query 107793 A 107793 | Sbjct 1283 A 1283 >seq46174 Length=2177 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| | ||||| | ||||| || ||||||||| |||| || | Sbjct 1728 AAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCG 1787 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || || ||||| |||||| | | ||| Sbjct 1788 TCAGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGCCTCCT----GAT 1843 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| |||| ||| || |||||| |||| || | || || | |||||| Sbjct 1844 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 1903 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| ||| | || | ||||||||| | || || || Sbjct 1904 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTCCGTGGTGG 1953 >seq338 Length=5205875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| || ||||| | ||||| || ||||| ||| |||| || | Sbjct 2398247 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 2398188 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || || ||||| ||||| | || ||| Sbjct 2398187 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 2398128 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| |||| ||| || |||||| |||| || | || || | |||||| Sbjct 2398127 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 2398068 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771 ||||| ||||||||||| | | | || | ||||||||| Sbjct 2398067 AACATCCAAAAGGAGTCCATGCTTCATCTTGTGTTGAGA 2398029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398630088466750