Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq418 100 4e-16 seq44605 98.7 2e-15 seq47707 96.9 5e-15 seq338 96.9 5e-15 seq432 95.1 2e-14 seq48498 91.5 2e-13 seq46174 91.5 2e-13 seq108 91.5 2e-13 seq86 91.5 2e-13 seq5 91.5 2e-13 seq472 89.7 8e-13 seq214 89.7 8e-13 seq41602 86.0 1e-11 seq347 86.0 1e-11 seq191 86.0 1e-11 >seq418 Length=10642717 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||||||||| | ||||| || || || ||| | || || |||| | Sbjct 2806720 TGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATCACTCTCGAGGTTGAACTGTCAG 2806661 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||||||||| ||||| || ||| ||||| ||||| || ||||| | Sbjct 2806660 ATACGATATCAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 2806601 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| |||||||| || ||||| || || ||| Sbjct 2806600 AAAGACTGATTTTTGCTGGCAAACAGTTGGAAGAT 2806566 >seq44605 Length=175201 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||||||||| | |||| || || || || | || || || | | | Sbjct 1906 TGCAGATTTTCATAAAAACCCTCCCAGGGAAGACCATCACCCTCGAGGTTGAGCCTTTGG 1847 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| ||||| ||||| || ||||| | Sbjct 1846 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 1787 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| || |||| || || ||| | || || || || || | Sbjct 1786 AAAGACTGATTTTTGCTGGCTAACAGTTGGAAGATGGGCGTACTTT----GACTACAACA 1731 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | |||||||| || || || ||| | || ||| || Sbjct 1730 TCCAAAAAGAGTCCACGATTCATCTTGTGTTAAGA 1696 Score = 93.3 bits (102), Expect = 7e-14 Identities = 115/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACA-TAAC 146090 |||| || || ||||||| | ||||| || || || || | || || |||| | Sbjct 856 TGCAGATTTTTGTAAAAACCCTTACAGGGAAGACCATCACCCTAGAGGTTGAACCCTTTG 797 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||||||| ||||| || ||| ||||| ||||| |||||||| Sbjct 796 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGGTAAGGAAGGAATTCCTCCCGATCAG 737 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 |||||||| |||||||| || ||||| || || ||| Sbjct 736 CAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGAT 701 >seq47707 Length=6282480 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||||||||| | ||||| || || || || |||| || |||| | Sbjct 1043595 TGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATCACCCTTGAGGTTGAACCGTAAA 1043654 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| | ||| ||||| ||||| || ||||| | Sbjct 1043655 ATACAATAGAAAATGTAAAAGCCAAAATCAAGGATAAGGAAGGAATTCCTCCTGATCAGC 1043714 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| | || || || || ||| | || || | ||||| || | Sbjct 1043715 AAAGACTGATTTTTGCTGCCAAGCAGTTGGAAGATGGGCGTACTTTGTCTGATTACAACA 1043774 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 1043775 TCCAAAAGGAGTCCAC 1043790 >seq338 Length=5205875 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | ||||| || || || || | || || |||| | Sbjct 2398243 TGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCGTCGG 2398184 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| ||||| ||||| || ||||| | Sbjct 2398183 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 2398124 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| || ||||| || || ||| | || || | || || || | Sbjct 2398123 AAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTACAACA 2398064 Query 146212 TACAAAAAGAATC 146224 | ||||| || || Sbjct 2398063 TCCAAAAGGAGTC 2398051 >seq432 Length=6714211 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || |||||||||| | ||||| || || | || | || || |||| || | Sbjct 4307292 TGCAGATTTTCATAAAAATCCTCACAGGGAAGACCGTCACCCTCGAGGTTGAACGATCA- 4307234 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||||||| ||||| || ||| ||||| ||||| || ||||| Sbjct 4307233 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 4307174 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| |||||||| || ||||| || || ||| | || || | || || || Sbjct 4307173 CAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTACAAC 4307114 Query 146211 ATACAAAAAGAATC 146224 || ||||| || || Sbjct 4307113 ATCCAAAAGGAGTC 4307100 >seq48498 Length=215879 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| | ||||| || || || || | || || |||| | Sbjct 7365 TGCAAATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCGTCGG 7306 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| ||||| ||||| || |||| | Sbjct 7305 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCGGC 7246 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||| |||||||| || ||||| || || ||| | | || | || || || | Sbjct 7245 GAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTTCTTTGTCTGACTACAACA 7186 Query 146212 TACAAAAAGAATC 146224 | ||||| ||||| Sbjct 7185 TCCAAAAGGAATC 7173 >seq46174 Length=2177 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||||||||| | ||||| || || ||||| | || || |||| | Sbjct 1732 TGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCGTCAG 1791 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| ||||| || || ||||| | Sbjct 1792 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGG----CCTCCTGATCAGC 1847 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| || ||||| || || ||| | || || | || || || | Sbjct 1848 AAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTACAACA 1907 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 1908 TCCAAAAGGAGTCCAC 1923 >seq108 Length=8981738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||||||||| | ||||| || || || || |||| || ||| | Sbjct 3100267 TGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATCACCCTTGAGGTTAAACCGTCGG 3100208 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| ||| ||| ||||| ||||| || ||||| | Sbjct 3100207 ATACAATAGAAAATGTAAAAGTCAAAATCCAAGATAAGGAAGGAATTCCTCCTGATCAGC 3100148 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| || | ||| || || || || || ||| Sbjct 3100147 AAAGACTGATCTGTGCTGGCAACCAGTTGGAAGAT 3100113 >seq86 Length=11366711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||| ||||| | |||||||| || || || | || || |||| | Sbjct 7206126 TGCAGATTTTCATCAAAACCCTTACAGGAAAGACCATCACCCTCGAGGTTGAACTGTCAG 7206067 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| ||||| ||||| || ||||| | Sbjct 7206066 ATACCATAAAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 7206007 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| ||||||| || || || || || ||| Sbjct 7206006 AAAGACTGGTTTTTGCTGGCAAGCAGTTGGAAGAT 7205972 >seq5 Length=157846 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||||||||| | ||||| || || ||||| | || || |||| | Sbjct 1051 TGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCGTCAG 1110 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| ||||| || || ||||| | Sbjct 1111 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGG----CCTCCTGATCAGC 1166 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| || ||||| || || ||| | || || | || || || | Sbjct 1167 AAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTACAACA 1226 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 1227 TCCAAAAGGAGTCCAC 1242 >seq472 Length=1492349 Score = 89.7 bits (98), Expect = 8e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | ||||| || || || || | || || |||| | Sbjct 1223059 TGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCGTCGG 1223118 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| |||| ||||| ||||||| | Sbjct 1223119 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGAAATTCCTTCCGATCAGC 1223178 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 ||||||| |||||||| || ||||| || || || Sbjct 1223179 AAAGACTGATTTTTGCTGGCAAACAGTTGGAAGA 1223212 >seq214 Length=4870197 Score = 89.7 bits (98), Expect = 8e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || |||||||||| | ||||| || | || || |||| || |||| || | Sbjct 4338836 TGCAGATTTTCATAAAAATCCTTACAGGGAAGATCATCACACTTGAGGTTGAACCATCA- 4338894 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||||||| ||||| || ||| ||||| ||||| | |||||| Sbjct 4338895 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCTGGATCAA 4338954 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| |||||||| || || || || || ||| Sbjct 4338955 TAAAGACTGATTTTTGCTGGCAAGCAGTTGGAAGAT 4338990 >seq41602 Length=2297222 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | ||||| || | || || | || || |||| | Sbjct 311748 TGCAGATTTTCGTAAAAACCCTCACAGGGAAGGCCATCACCCTCGAGGTTGAACCGTCGG 311807 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| ||||| ||||| || ||||| | Sbjct 311808 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 311867 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| |||||||| || || || || || ||| Sbjct 311868 AAAGACTGATTTTTGCTGGCAAGCAGTTGGAAGAT 311902 >seq347 Length=5549683 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| | ||||| || || || || | || || |||| | | Sbjct 1107716 TGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCTTCGG 1107775 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||| |||| ||||| || ||||| | Sbjct 1107776 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGGTAAGAAAGGAATTCCTCCTGATCAGC 1107835 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| |||||||| || || || || || ||| Sbjct 1107836 AAAGACTGATTTTTGCTGGCAAGCAGTTGGAAGAT 1107870 >seq191 Length=10176270 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | ||||| || || || || |||| || |||| | Sbjct 6678406 TGCACATTTTCCTAAAAACCCTCACAGGGAAGACTATCACCCTTGAGGTTGAACCGTCGG 6678347 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGAT-CAA 146150 |||| || ||||||||||| ||||| || ||| ||||| ||||| || ||| || Sbjct 6678346 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCCAG 6678287 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATT 146179 |||||||| |||||||| || || || || Sbjct 6678286 CAAAGACTGATTTTTGCTGGCAAGCAGTT 6678258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785667675690000