Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023552.1 Length=47162 Score E Sequences producing significant alignments: (Bits) Value seq46136 152 2e-32 seq42164 129 2e-25 seq45817 91.5 4e-14 >seq46136 Length=4795 Score = 152 bits (168), Expect = 2e-32 Identities = 196/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 12098 TGGCAACGGCTGTTCGGTACCCAGTTCGAGGATATGGGCGACGCGATCAACCACCTCGAT 12157 |||||||| || ||||| || |||| ||||| |||||||| || ||||| | ||||| Sbjct 800 TGGCAACGCCTTTTCGGCACGCAGTGGGAGGACATGGGCGATGCTGTCAACAAACTCGAC 741 Query 12158 CTCGACCCGGCTAAGAACGAGTTCGACGACCTACAGGGCACCTCGGACCGGGCGACCAAG 12217 |||||||||||||| ||| ||||| | || || || | ||||||| | || |||| ||| Sbjct 740 CTCGACCCGGCTAAAAACCAGTTCAAGGATCTGCAAGACACCTCGCAGCGATCGACTAAG 681 Query 12218 ACCGCGACCGACAACTTCAAATCGGACTGGGAAGAG-GCGACGCGCACCGTCGGGCAGTA 12276 |||||||| || | ||||| || || ||||| ||| || || || |||| || | Sbjct 680 ACCGCGACGGAGACGTTCAAGTCCGAGTGGGA-GAGCGCAACCAAGACGGTCGATCAATG 622 Query 12277 TTTCTCGGACCTGAAAACCGATATCGCCGAGTGGTTCTCAGACCTGCCTGTCATTCGTGA 12336 ||| | ||||| || ||| |||| | || ||||| || ||||||||||| | || Sbjct 621 GTTCACCGACCTAAAGACCAGTATCTCGGATTGGTTTGTGGATCTGCCTGTCATCAGGGA 562 Query 12337 CATTCCGCAGTTCATCACCGATGTGTTC 12364 ||| ||| | | |||| || ||||| Sbjct 561 CATCCCGACGATGATCAAGGACCTGTTC 534 >seq42164 Length=289 Score = 129 bits (142), Expect = 2e-25 Identities = 152/200 (76%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 4249 CGCGCGCAACCG-GTTCGATCTGTCGGTGTTCAACCATGCTGGGCGCTCGCAGGCGCCAG 4307 |||| ||| | | |||||||||||||| |||| | |||| || ||| | ||||| | Sbjct 240 CGCGTGCATCGGTGTTCGATCTGTCGGCGTTCCGCTATGCCGGACGCCAGTCCGCGCCTG 181 Query 4308 CGCCGCGAATCCCGCAGGCGCACAACCAGACCCCTCAGCCAGTCGAGGCCGAGG-CAAGT 4366 |||| ||||| |||| || ||||||| ||||||||| ||| | ||| ||||| ||| Sbjct 180 CGCCACGAATTCCGCTGGTGCACAACAAGACCCCTCGGCCCGAGAAGGGCGAGGTCAACA 121 Query 4367 GAAAGAGAGGAGCCCACTGTGGGAACCCTGAGTGAGAGCGCGTTGC--AGAAGCTCGGTC 4424 | | || ||||||||| ||||| |||||||| | ||| || | || || ||||||| Sbjct 120 G-AGGAAAGGAGCCCATTGTGGCAACCCTGAAT--GAGGGCCTCGCCAAGCTGCTCGGTA 64 Query 4425 TCGACGCCGATGCCGACGAC 4444 |||| ||||| ||||||||| Sbjct 63 TCGATGCCGACGCCGACGAC 44 >seq45817 Length=532 Score = 91.5 bits (100), Expect = 4e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 28224 CATCGTGAACGAGTCGGGCATGTACGAGGTTGTCATCCGCTCGGACAAACCCGAGGCGGT 28283 ||||||| ||| |||||||||||||||| ||||| ||||||||||| |||||||| || Sbjct 109 CATCGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGT 50 Query 28284 CGCGTTCCGCCGCTGGATCACCGGCACCGTTCTCCCCGAGATCCG 28328 || |||||| || | | || || || ||||| ||| ||||| Sbjct 49 CGAGTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150705921366000