Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq598 95.1 1e-14 seq472 91.5 1e-13 seq47707 87.8 2e-12 seq338 87.8 2e-12 >seq598 Length=3788045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||||| ||| ||||| ||||| |||||||| || || || | | ||||| || || Sbjct 3751585 ATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTG 3751526 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 ||| |||||| | ||||| | ||||||||| ||||| || || | || || ||||| Sbjct 3751525 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTGGATTTT 3751466 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||||| | ||| | || || | ||||| || || | || | ||||| || || Sbjct 3751465 GGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 3751406 Query 137388 CAATGTTTTTACGAATATTTGCATA 137412 | ||||||||||| || |||||| Sbjct 3751405 GAGGGTTTTTACGAAAATCTGCATA 3751381 >seq472 Length=1492349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| || || || ||||| |||||||| || || || | | ||| Sbjct 1223270 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCGTC 1223211 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||||| |||||| | ||||| | ||||||||||| ||| || |||| || || Sbjct 1223210 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAAGGAATTTCTTCCTTATC 1223151 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||||| ||||| | ||| | || || | ||||| || || | || | || Sbjct 1223150 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 1223091 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || | ||||||||||| || ||||| Sbjct 1223090 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 1223058 >seq47707 Length=6282480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| || || || ||||| ||||||||||| || || | | || Sbjct 1043806 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATC 1043747 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | || || ||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 1043746 TTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1043687 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 | ||||| ||||| | ||| | || | | ||||| || |||| || | || Sbjct 1043686 CTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGT 1043627 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || | ||||||| ||| || ||||| Sbjct 1043626 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1043594 >seq338 Length=5205875 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| | || || ||||| |||||||| || || || | | || Sbjct 2398032 CAACACAAGATGAAGCATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 2398091 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||||| |||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 2398092 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2398151 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||||| ||||| | ||| | || || | ||||| || || | || | || Sbjct 2398152 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 2398211 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || | ||||||||||| || ||||| Sbjct 2398212 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2398244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488234079900000