Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023687.1 Length=53003 Score E Sequences producing significant alignments: (Bits) Value seq46163 203 1e-47 >seq46163 Length=1271 Score = 203 bits (224), Expect = 1e-47 Identities = 351/509 (69%), Gaps = 22/509 (4%) Strand=Plus/Plus Query 4024 TGAGCTTCCGGATCGTCAACGGGAACACCCACACCGAGAAGGGGTGGCGGTGCTGCAACA 4083 |||| ||||| | || |||| || || ||||||| || ||||| |||||| Sbjct 728 TGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATGTGCAACC 787 Query 4084 GGGACGAGTGCGACATCGTCCGAATCCCCGGCCTGTATCTAACCGACACAGCACCCATCC 4143 ||||||| ||||||||||| || ||| || ||||| || ||| || ||||| | | Sbjct 788 GGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCACCGCTGC 847 Query 4144 GTAAGGGAGCTCCGCTAACCATTCTCGGGGCGTGGCTGTACTGGTACGACCGCAACGTCG 4203 | ||||| || ||||| ||||| ||||| || |||||||||||||| ||||||||||||| Sbjct 848 GCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGCAACGTCG 907 Query 4204 AGGAGATCGTCACCCCGATCTGGGGCTGGTCCCTTGATAACGACGTACTAGGGCAGCCGG 4263 | |||||| | |||| | ||||| ||||| |||||| || | ||| Sbjct 908 AAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCCACTAACGATGTTC-------GCC-- 958 Query 4264 GGAAGAACAACGGGTCTAACCACCTGTCCGGGGTAGCTGTGGACGTCAACGCGCCCAAGT 4323 |||| ||| |||||| | || ||||| ||||| | || ||||||| Sbjct 959 -----AACA------GTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAGT 1007 Query 4324 ACCCCTGGGGCACGTACCGGATGTCTGCGGACAAGATTGCCAAGGTCGAGGAAGGACTTC 4383 |||||||| |||| |||| ||| | || | ||||||||| | |||| | | Sbjct 1008 ACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAGGCCAAGGTC-CGCAAGGGCCTG 1066 Query 4384 G-GCTGTTCGAAGGGACAGTCTTCTGGGGACGGCGCTGGTCAAAGCCCGACGAGATGCAC 4442 | ||||||||| || | || |||||||| || |||||| ||||||||||||||| Sbjct 1067 GCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCAC 1126 Query 4443 TACGACCTCTCGTACCCCGAAGGCGACCCTCGAAACGAAGCCTTCGCGAAGAAGCTCCTG 4502 ||| | | | | ||||| |||||| || || || || ||||| ||||| | Sbjct 1127 TACCAGATGGCCTGGCCCGAGGGCGACAAGCGCAATGACGCGTTCGCCGCCAAGCTGCGC 1186 Query 4503 GATGGGTACCTCGGGATTTACAAGCCCGC 4531 | || |||||||| || ||| |||||| Sbjct 1187 GCCGGATACCTCGGCATCTACGCGCCCGC 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169385856997500