Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023692.1 Length=48984 Score E Sequences producing significant alignments: (Bits) Value seq46136 141 3e-29 seq46163 138 4e-28 seq46043 86.0 2e-12 >seq46136 Length=4795 Score = 141 bits (156), Expect = 3e-29 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 11832 TGGCAACGGCTGTTCGGTACGCAGTTCGAGGATCTCGGCGACGCTATCAACCATTTCGAC 11891 |||||||| || ||||| ||||||| ||||| | ||||| ||| ||||| | ||||| Sbjct 800 TGGCAACGCCTTTTCGGCACGCAGTGGGAGGACATGGGCGATGCTGTCAACAAACTCGAC 741 Query 11892 CTCGACCCTGCCAAGACCGAGTTCGACGACCTACAGGGCACCTCGGACCGCGCGACCAAG 11951 |||||||| || || | | ||||| | || || || | ||||||| | || |||| ||| Sbjct 740 CTCGACCCGGCTAAAAACCAGTTCAAGGATCTGCAAGACACCTCGCAGCGATCGACTAAG 681 Query 11952 ACCGCCACGGACAACTTCAAATCAGACTGGGAGGAGGCGACCCGCACCGTCGGGCAGTTT 12011 ||||| ||||| | ||||| || || |||||| || ||| || |||| || | Sbjct 680 ACCGCGACGGAGACGTTCAAGTCCGAGTGGGAGAGCGCAACCAAGACGGTCGATCAATGG 621 Query 12012 TTCTCGGACCTGAAAACCGATATCGCCGATTGGTTCTCAGACCTGCCGGTCATCCGCGAC 12071 ||| | ||||| || ||| |||| | |||||||| || ||||| |||||| | ||| Sbjct 620 TTCACCGACCTAAAGACCAGTATCTCGGATTGGTTTGTGGATCTGCCTGTCATCAGGGAC 561 Query 12072 GTTCCG 12077 | ||| Sbjct 560 ATCCCG 555 >seq46163 Length=1271 Score = 138 bits (152), Expect = 4e-28 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 23148 ATGTCTGAATATCAGGCGGCGCACCGACGGGCGTGC-GCGTCGGCGATCACCGCGCTCGG 23206 ||||| ||||| || || |||||||||| || ||| ||| || | |||||||| ||||| Sbjct 227 ATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCCG-CAATCACCGCACTCGG 285 Query 23207 CAACCGAATCGGGCTCTACGCCGGATCGACCCGCGTCGGCACCGTGTTTTCCGACACCAC 23266 ||||||||||||||| | |||||| || ||||| || ||||||| | |||||||||| Sbjct 286 CAACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACCGCCTACGCCGACACCAC 345 Query 23267 TTGGGGCACAGCGACCGACGTAACCGAGGGCGGCGTCGCTAAGGCGCAGGTAACCGGCTC 23326 |||| ||| | ||| || ||||| |||| ||| ||||| |||||||| Sbjct 346 CTGGGCCACCCCAGTCGATGTCACCGAATCCGGCATCGACAAGGCATCATCCACCGGCTC 405 Query 23327 GACTGTCACGATCACGATTCCCGAGAGCACAGTGTCGAACGGTACGACGATCGACCGCTA 23386 | || || ||| || | || | |||| ||| | ||||| ||| |||| |||| || Sbjct 406 GCTGGTAACCATCTCGGTACCTGGCGGCACCGTGGCCAACGGCACGGTGATCAACCGGTA 465 Query 23387 Cgg 23389 ||| Sbjct 466 CGG 468 >seq46043 Length=3937 Score = 86.0 bits (94), Expect = 2e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48033 CCGCAAGGCCAACACCACCGACAAGGGGCTCGGCTGGGCGCACCAGCAGGACGCCGCCCG 48092 ||| ||||||| ||||||||| || || |||||| ||||| ||| | |||| | Sbjct 115 CCGTAAGGCCAGCACCACCGATCGCGGTCTGGGCTGGAAACACCAACAGCAAGCCGAGGG 56 Query 48093 ACTGCTACGCCGACACGAGAACGGCACGCTCTGCTGGTGGTGTGGCCTACCGATG 48147 ||| | ||||| |||| ||||||| || ||||||||||||||||| |||||| Sbjct 55 CCTGTTGCGCCGTCACGTCGACGGCACACTGTGCTGGTGGTGTGGCCTGCCGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156532807639000