Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023697.1 Length=48420 Score E Sequences producing significant alignments: (Bits) Value seq49917 333 8e-87 seq46136 178 4e-40 seq50663 156 1e-33 seq42881 131 5e-26 seq45817 100 9e-17 seq50019 95.1 4e-15 >seq49917 Length=2087 Score = 333 bits (368), Expect = 8e-87 Identities = 749/1112 (67%), Gaps = 25/1112 (2%) Strand=Plus/Plus Query 16778 TACCAAAAAGGCGCGTGGACCAGCACCG-CGAACTGCATCGGCATCTGGGACATCCTGAA 16836 ||| |||| ||||||||||| ||| | ||| ||| |||||| |||||||||||||| Sbjct 172 TACGAAAAGGGCGCGTGGACAGGCAATGTCGAGATGCG-CGGCATTTGGGACATCCTGAA 230 Query 16837 CTACCTCACGATCTGGCCGTCGTGGTTCCTGCCGATCCAGATTCAGCCGTTCTCGCACGC 16896 |||| | |||||||||| |||||| || || | ||||| | |||||||| Sbjct 231 CTACTACGTGATCTGGCCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGC 290 Query 16897 GGTGTTCGTCGGGCCGATCGTCACCGTGATCGAGAACATGATCAGCGAGTGCGCCCTGCG 16956 | ||| || || || | ||| | ||||||||| || ||| ||||| ||||| Sbjct 291 AATCTTCATCTGGGCGCTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCG 350 Query 16957 CGTGCAGGCCGGCATCAACGAGTTCCTGAACAACGCGCTGTCACTC-----AACCCCGAC 17011 | | ||| |||| |||||| | |||||||| ||||| ||| ||| |||| Sbjct 351 CATCCAGTCCGGGTGGCTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGAC 410 Query 17012 GTACGCGCCTGGTTCGGCTCGATCCTGCAGGCGATCTCGCGCGACGGCCTCAACCCGCGG 17071 | || || ||| | ||| | ||| |||| || || ||||||| ||| || | Sbjct 411 ATCCGGGCATGGATGGGCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAG 470 Query 17072 GCCATCCTCGAGATGCTCAAAACGCCGATGTACGTCGTGCGCACCAACCCGTTCCTCGAC 17131 || || | ||||||| || || | || || |||||||||||||||||| ||| Sbjct 471 ACCTTCGGCAAGATGCTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGAC 530 Query 17132 GGATCACCGGCA-GTG-GCCAAGACGGTTCGCATGGAGTCGTGCGGCACCACGATCCGCG 17189 ||| || || ||| |||||||| ||||||||||| | ||||| || ||| | Sbjct 531 ACATCGCC--CATGTGCGCCAAGACCGTTCGCATGGAAACCTGCGGAACGGTCATCAAGG 588 Query 17190 ACCTGACCAAGGCGTACGGCGTCGTCGTCGACGTGACCCTGTGGCGGCCGGGCGACCCGC 17249 | | ||| || ||||| || | | | | || ||||||||| ||||| ||||||| Sbjct 589 ATGTCACCCGCGCCTACGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGC 648 Query 17250 AGCCGGATCGGTGGGCGAACCTCACCAAATCG---ACCTA--TGTTGTC-ACGGTCAAGG 17303 | ||||| |||||| |||||| | ||| ||||| |||| || || | || Sbjct 649 AACCGGACAAGTGGGCCAACCTCG---ATTCGCCCACCTACGTGTTTTCCAC---CCGGG 702 Query 17304 ACCGCAGCCAGATTTCGGGCCCGACGCACACGATCCTCGACTCGGCGTTCCGCACTGCGG 17363 ||||| ||||| ||||| || || | || | ||| |||| | || || | | Sbjct 703 ACCGCCAGCAGATCTCGGGGCCCACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGA 762 Query 17364 TCGACCTCGGCGGATCGCTCGGCGACATCTTCTACCCGATCATCCGCGAGGTGCAGTCGA 17423 |||||||||||||||| ||||| ||||||||| | || |||||| |||| | | Sbjct 763 TCGACCTCGGCGGATCACTCGGTGACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTA 822 Query 17424 TGCCGGGCGTGTATCACGCCCCGGCGCTCGGCGTGAACTTCACCGAACCCTACGCGGTCG 17483 || || |||| ||||||| |||||| || | ||| | |||||||| || Sbjct 823 TGAACGGGGTGTTCTACGCCCCCAAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACG 882 Query 17484 TCGTCGCGCCCGAGCTGGGCGGTGACTCGCCGCTGCTGTCGTGCCGGATCACCGACCACA 17543 ||||||| ||||| ||||| ||||| | | ||| ||| ||||||||| Sbjct 883 TCGTCGCCCCCGAAGAGGGCGAGGACTCCAACATCATCAACTGCGAAATCGCCGACCACA 942 Query 17544 CACCGAAGGCGTGGCAAATCCAGATCGGCGGTCGCAGCCCGAAGTGGCTGAACGATTTGA 17603 | || ||| |||||| | |||||||| || || |||||| ||||||| || | Sbjct 943 CCCCCGAGGGCTGGCAACACATCATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAA 1002 Query 17604 TCAACGCTACCCTGGCATGGCTGATCGACTCGATCTCAATCGTGCTGGGGTTCACCGGGA 17663 | || || ||| | ||| || ||| | ||| | |||||| | |||||| |||| | Sbjct 1003 TGAATGCCACCTTCGCAGGGTGGATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCA 1062 Query 17664 TTCCCTCGAACCTGCTCGACGGGTTCCTCAACGACGCGTTTTTCGCGTTCCAGCTGCTGC 17723 | || ||| | |||||| || ||||| ||| || || | ||||||||| || | | Sbjct 1063 TCCCGTCGGATCTGCTCTCGGGATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCC 1122 Query 17724 AGCACTACCAGCGCCGCGCGCAAATGGGTCCGATGCACCCGAACATCGAGGTGATGATCC 17783 || |||||| ||||| | |||| || | || ||| |||||| | | || Sbjct 1123 AGGTGTACCAGGTCCGCGACGAGGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACC 1182 Query 17784 CGA-CGCCGTCGCCGCCGTACAACGTCGAGGCGATCTTCACGTTCCTCACCGCGCTGTTC 17842 ||| |||| |||| ||||||||| |||| | || ||| ||||| ||| |||| | ||| Sbjct 1183 CGACCGCCAGCGCC-CCGTACAACATCGAAACCATGTTCGCGTTCATCAACGCGATTTTC 1241 Query 17843 GACACCCGCGGCTACACCTCGGCGCAAGCCAC 17874 || ||| || ||| ||||||| | ||| Sbjct 1242 GATGCCCAAGGTGCTACCACGGCGCAGGTCAC 1273 >seq46136 Length=4795 Score = 178 bits (196), Expect = 4e-40 Identities = 290/410 (71%), Gaps = 17/410 (4%) Strand=Plus/Minus Query 10159 TACGTGAAGTTCCTCAAGGCCGGCCACGTGCCCGGCCAGATCAGCAC-CACGTGGCAGGT 10217 |||| ||||||||| |||||| || ||||| |||||| || ||| ||| |||| Sbjct 2756 TACGCCAAGTTCCTCGCTGCCGGCGGTGTTCCCGGTCAGATCGATACGCAC-TGGAAGGT 2698 Query 10218 GATGGCCAAACAGCTGGAGGACCGTCGCCGCCAG---GACTCCAAAAGTTCTTGAAGCAC 10274 |||| ||||||||||| || | | || |||||||||||| |||| ||| Sbjct 2697 GATGCAGCGCCAGCTGGAGGAGCG--GACAA-AGATCGACTCCAAAAGTAATTGAGGCAG 2641 Query 10275 TGGCGCTGTGGTGCCGCTACCCCGATGAGATTGAGGCCGATCTGCGGATCTACTGCAACG 10334 | |||||||||||||| | ||| ||| ||| ||||||||||| || | | | Sbjct 2640 TAGCGCTGTGGTGCCGTTGGCCCAATGCGATCGAGGCCGATCTTCGTTTTCGCGGTGTGC 2581 Query 10335 GCACCGACATCCGGTGGTGGCACCGCGGCGACCGCGACGAGCATGGCTGCTTGAAGTTGT 10394 ||| || | | | ||||||| ||| |||||| |||| ||| | || | | | Sbjct 2580 GCATCG----CTGAT--TGGCACCAGGGCACCCGCGATGAGCGCGGCGCCCTGGTGCTTT 2527 Query 10395 CGAGCAGGCTGCTGCTGAACCTGGTTCGCAGCCTGCCCGCGAAGTCTGAGTTCAAAACTA 10454 | ||| | | || ||| ||| | | | ||||||| | || ||||||||||| Sbjct 2526 CCAGCCGCCAACTACTGTCGCTGATCCACCAGCTGCCCGAAGACTCAGAGTTCAAAACCC 2467 Query 10455 ATGCCCCGCCGCCGTTTGGCCGCGACGGCGACTGGACCGTCGTCGAGAAGATGCTCGCCT 10514 | || ||||||||||||||| | ||||| |||||| ||| | ||||||| ||||| Sbjct 2466 AAGCGCCGCCGCCGTTTGGC---GCCGGCGGCTGGACGGTCATGCAGAAGATCATCGCCG 2410 Query 10515 CGACGCGTAACGAGCTGGCGGCCTACCGGGCCAGCAAGTACGCGGGCACC 10564 ||| | |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 2409 AGACACACAACGAGCTCGCGGCATACCGGGCCAGCAAGTACGCGGGCACC 2360 >seq50663 Length=1982 Score = 156 bits (172), Expect = 1e-33 Identities = 305/448 (68%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 17429 GGCGTGTATCACGCCCCGGCGCTCGGCGTGAACTTCACCGAACCCTACGCGGTCGTCGTC 17488 || |||| | |||| ||| ||||| ||||||||| |||||||||| | || Sbjct 1354 GGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTACGCCTATCTTGTT 1413 Query 17489 GCGCCCGAGCTGGGCGGTGACTCGCCGCTGCTGTCGTGCCGGATCACCGACCACACACCG 17548 ||||| || || | ||||| | | ||||||||||||||| |||| || || Sbjct 1414 GCGCCAGAATCCGGTGAGGACTCATCCATCACCTCGTGCCGGATCACCAACCATACCCCC 1473 Query 17549 AAGGCGTGGCAAATCCAGATCGGCGGTCGCAGCCCGAAGTGGCTGAACGATTTGATCAAC 17608 ||| ||||| | ||||| || || ||||| |||||| ||||||| ||||| || Sbjct 1474 GAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCTAAGTGGTTGAACGACTTGATGAAT 1533 Query 17609 GCTACCCTGGCATGGCTGATCGACTCGATCTCAATCGTGCTGGGGTTCACCGGGATTCCC 17668 || || | || ||| ||||||| ||| | |||||| | |||||| |||| || || Sbjct 1534 GCCACGTTCGCGTGGTTGATCGATTCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCA 1593 Query 17669 TCGAACCTGCTCGACGGGTTCCTCAACGACGCGTTTTTCGCGTTCCAGCTGCTGCAGCAC 17728 || ||||||| ||| ||||| ||| || || | || |||||||| ||||||||| Sbjct 1594 TCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCCTGCAGCAC 1653 Query 17729 TACCAGCGCCGCGCGCAAATGGGTCCGATGCACCCGAACATCGAG-GTGATGATCCCGAC 17787 ||| | || |||| || | || || ||||| ||||| | ||||| || Sbjct 1654 TACGACCGACGCGACGAAGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCC-AC 1712 Query 17788 GCCGTCGCCGCCGTACAACGTCGAGGCGATCTTCACGTTCCTCACCGCGCTGTTCGACAC 17847 | || | || |||||| |||| | | ||| ||||| ||| ||| || || || | Sbjct 1713 CGCATCAGCCCCCTACAACATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTC 1772 Query 17848 CCGCGGCTACACCTCGGCGCAAGCCACG 17875 | ||||||||| | || |||| |||| Sbjct 1773 ACAGGGCTACACCACCGCACAAGTCACG 1800 Score = 84.2 bits (92), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 9/172 (5%) Strand=Plus/Plus Query 16048 CAGATCGGCTCGGTGTTCGGCATCGTGCCCCCGCAGGGCAACCTCTATTCGCTGATCAAG 16107 |||||| ||| | ||||||||| || ||||| || || || || | ||||| Sbjct 102 CAGATCAAGTCGTTCTTCGGCATCCGTCCACCGCAAGGGAATCTGTACAAGTACCTCAAG 161 Query 16108 GGCCGCTGGAACAAGAATTCGGTCATTCCGCCGAAGTCGCCCGGCCAGCCCGACTCGCAG 16167 ||||| | | ||||| ||| || || ||||| ||||||||| || ||| || || Sbjct 162 GGCCGGTTCTCCCAGAATGCGGCGATCCCACCGAAATCGCCCGGCGAG---GACGCGAAG 218 Query 16168 GTCACGCCGTACTACGTCAAGGTCTCGATCGACAACGGCAACGCCGACTCGA 16219 || |||| |||||| || ||||||||||||||| ||||||||||| Sbjct 219 ------CCATACTTCGTCAAAGTTGCGATCGACAACGGCACCGCCGACTCGA 264 >seq42881 Length=1721 Score = 131 bits (144), Expect = 5e-26 Identities = 200/286 (70%), Gaps = 12/286 (4%) Strand=Plus/Plus Query 12965 TCGGCGCAGATGAAGCTCGCCGAGGCGCAGCAGGGCACCTGGAAAAAGATGGAGGACACC 13024 || ||||| |||||||| ||||||||||||| ||||| ||| |||||| ||| Sbjct 1418 TCAGCGCAAATGAAGCTGGCCGAGGCGCAGCGCGGCACGGTGAAGAAGATGAAGG----- 1472 Query 13025 GCCAAGCAGTTCTCTCAGGGCATGGAGGGGATCGGCGCGGCGCTCGACAACGACCTCGGC 13084 ||| || | | | |||| || ||| ||||| ||| || |||| ||||| Sbjct 1473 GCC-------TCACCGACGAGATGGGGGAGATTGGCGCCAAGCTGGATGCCGACTTCGGC 1525 Query 13085 ATCAGCAAGGGCCTGCCGGGCCTCGCCGAGAACCTCGTGAAGTTCCTCGCCAACCTCGCC 13144 | ||||||||| || || |||||||| || ||||||| |||| || ||||| Sbjct 1526 GCCTCCAAGGGCCTCGGTGGACTTGCCGAGAATCTAACGAAGTTCGTCGCGAATCTCGCG 1585 Query 13145 GCGGCCCCGCTGCTCGGCCAGCTGTCGGCCATCAGCCAGGCAAACCCGATCCAGGGCGGC 13204 || ||| |||| || ||||| || || ||| || ||||| | ||||||| Sbjct 1586 TTCGCGCCGATGCTTGGGCAGCTCAGCGCTATAAGCGCCGCCAACCCCTCCAAGGGCGGA 1645 Query 13205 CACGGCCTGATGGGAATCCTCGGCGCGCAGGGCGTGTTCGGGCCGC 13250 |||| ||||||| |||||||| |||||||| || |||||||||| Sbjct 1646 TACGGGATGATGGGCATCCTCGGGGCGCAGGGTGTATTCGGGCCGC 1691 >seq45817 Length=532 Score = 100 bits (110), Expect = 9e-17 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29146 CATCGTGTCCGAGTCGGGCATGTACGAGGTTGTCATCCGCTCGGACAAACCCGAGGCGGT 29205 |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||| || Sbjct 109 CATCGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGT 50 Query 29206 CGCGTTCCGCCGCTGGATCACCGGCACCGTCCTGCCCGAGATCCG 29250 || |||||| || | | || || || || |||||| ||||| Sbjct 49 CGAGTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 >seq50019 Length=220 Score = 95.1 bits (104), Expect = 4e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 4258 CGACGGCCTCACCCTCGACGGTTACGGCGCGGTGTTCAACAGCGTCACCGTGATCGACAG 4317 ||||||||||||| | || || |||||||||||||||||| |||| ||||||| Sbjct 170 CGACGGCCTCACCTTTGAAGGCTACGGCGCGGTGTTCAACTCGCCCACCCGGATCGACTC 111 Query 4318 CTACGAGGGCCGGTTCAAGGAACTCATCGCGCCCGGCTCGATGAAGCGGTCATTTCGCGA 4377 || || ||| ||| | |||| ||||| ||||| || | ||| ||||||| Sbjct 110 CTGGGAAGGCACATTCGATGAACAGATCGCACCCGGTGCGTTCCGTAAGTCGCTTCGCGA 51 Query 4378 GTCGC-CACCCAAAGTGCAGTTCGACCACGGCCGACACCCGATGATCGG 4425 | ||| ||||||| | |||||||||||||| | ||||| ||||||| Sbjct 50 G-CGCACACCCAAGTTCCAGTTCGACCACGGACACCACCCCCTGATCGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154729095313000