Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023698.1 Length=54470 Score E Sequences producing significant alignments: (Bits) Value seq39852 125 2e-24 >seq39852 Length=3441 Score = 125 bits (138), Expect = 2e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 35230 TCACCGTTCGACGCCATCAGGCGGTCGACCCCGGAGGGCCGCGAGTATTGGTCGGCCCGG 35289 || ||||||||||| ||| | | ||| |||||||||||||| |||||||| || Sbjct 1119 TCCCCGTTCGACGCGATCCGTCACCTGACTGACGAGGGCCGCGAGTACTGGTCGGCACGT 1178 Query 35290 GAACTCATGCCGCTACTCGGGTACGAGAAGTGGGAGCGGTTCGCCGACGCGATCGGTCGC 35349 || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | || Sbjct 1179 GATCTCATGCCGCTGCTCGGATACGAGAAGTGGGAGCGGTTCGCCGACGCCATCAGCCGT 1238 Query 35350 GCAAAGATCGCCGC 35363 || || | ||||| Sbjct 1239 GCCAACCTTGCCGC 1252 Score = 102 bits (112), Expect = 3e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 35448 GGATGACTACCACCTGTCGCGGTACGCCTGCTACCTCGTCGCGATGTCGAGCGATGCGCG 35507 || |||||||||||| || |||||||||||||| |||||||| | ||||| | || Sbjct 1323 GGCTGACTACCACCTCTCCCGGTACGCCTGCTATCTCGTCGCACTCAATGGCGATCCACG 1382 Query 35508 CAAGCCGGAGGTGGCTGCTGCGCTGACGTACTTCGCGATCAGGACCCGTGAGGCTGAGA 35566 |||||| || | || || |||| ||| ||||||| |||| |||||||||||| |||| Sbjct 1383 CAAGCCTGAAATCGCAGCCGCGCAGACATACTTCGTCATCAAGACCCGTGAGGCCGAGA 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174077427888000