Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023703.1 Length=64613 Score E Sequences producing significant alignments: (Bits) Value seq40065 251 3e-62 seq38458 239 2e-58 seq45817 89.7 2e-13 >seq40065 Length=1045 Score = 251 bits (278), Expect = 3e-62 Identities = 433/621 (70%), Gaps = 12/621 (2%) Strand=Plus/Plus Query 51899 CGCCGCCCGCTGCTCAATGGCGTGTCGACTGTGTGGGGCAATCGGCAGAAGGGCGAGATC 51958 ||||| || || ||| | ||| | ||||| || ||||| || ||| | |||||| || || Sbjct 10 CGCCGGCCACTACTCCAAGGCCTCTCGACCGTCTGGGGGAACCGGGACAAGGGCCAGGTC 69 Query 51959 ACCGCTGTCTACGACGAACTCACCGCCGACGCAGCCGACGCCTACACACGCCGCAGTGAC 52018 | || ||||| |||||||| | ||||| | | | |||||| || || | |||| Sbjct 70 AGCGTGATCTACAACGAACTCGGGACGGACGCGACGGCGGACTACACCCGTCGAAATGAC 129 Query 52019 CGCCTGATCCTGCGCTTCGTGCCGGACCCCGACTGGGCGACCATGCGTGCGA--CCGCTG 52076 || | ||| || || | ||||||| ||||| ||| || | | | |||||| Sbjct 130 GTGCTCGCCTTGCAATTTGTCGCCCACCCCGATTGGGCCACCCTG--TTCAATGCCGCTG 187 Query 52077 ACGGACAGTTCCACACCCAGGACGAGTTCGGTGACCTGATCGAAGCGGCTGGCCACCTCA 52136 |||| |||||||| | ||| || ||||| ||||||||||| ||| || ||||| | Sbjct 188 ACGGCAAGTTCCACTCTCAGCTGGATTTCGGCGACCTGATCGAGCAGGCCGGGCACCTGA 247 Query 52137 TCATTTCCCACCCCGCAGCGGAACTGATGGAGATCGTGGACAGCGTCC--GCA-CCAGTT 52193 ||| || |||| || || || | ||||||||| | |||||| ||| ||| | || Sbjct 248 TCACCTCGCACCAGGCCGCCGATGTCATGGAGATCATCGACAGCATCCGAGCATCGAG-- 305 Query 52194 CCAAAGGGTCATTCGAATCGAAGATCCGCCGCGACACGGGCAGCCAGTACCTCACCTACT 52253 ||| || |||||||| || ||| |||| ||| ||||| | |||| |||||| Sbjct 306 -CAAGGGATCATTCGAGTCAGGAATCAAGCGCGCCACCAGCAGCGTGAACCTGACCTACA 364 Query 52254 CGGAAGAGGTATCGGCGAAGGCTGGATCATCGACCAGGCCGCTGGAGGTCCCCCGTGAGA 52313 || || |||||||| ||||| || | | || ||| || ||| | || || || | Sbjct 365 GCGAGGAAGTATCGGCCAAGGCGGGCACCGCAACTCGGCAACTTGAGATACCGCGCGAAA 424 Query 52314 TCACCATGAGCGCACGGCCGTTCGAGGACTACCCGCAGGTGGAGGTGAAGTGCTGGCTGC 52373 ||||| || || || || ||||||||||||||| | ||||| ||||||| ||| Sbjct 425 TCACCTTGTCGGCCCGACCATTCGAGGACTACCCGGTCATCGAGGTTCGGTGCTGGTTGC 484 Query 52374 GGCTTCGAATCAACCAGGGCCAGTTGTACCTGGGACTGTTCCCGCAGCCCTATGAGCACC 52433 | || ||| ||||| || || || || |||||||| ||||||||| |||||| Sbjct 485 GCCTGAACATCTCGCAGGGGCAACTGGGGCTCGGCCTGTTCCCACAGCCCTATCAGCACC 544 Query 52434 GTGTGCGCGACGCCTGGGTGCACGTCACTGGCGAGTTGGCCG-AGCAGCTGGGCGTTCCG 52492 |||||||| || ||| |||||| || |||||| || ||| |||| || || || || Sbjct 545 TCGTGCGCGATGCATGGACGCACGTAACCGGCGAGCTGTCCGAAGCA-CTCGGGGTGCCC 603 Query 52493 GTGTACGCGTCGAACGTGGGC 52513 || ||||| | ||| | ||| Sbjct 604 GTCTACGCCGCCAACCTCGGC 624 >seq38458 Length=1404 Score = 239 bits (264), Expect = 2e-58 Identities = 275/359 (77%), Gaps = 12/359 (3%) Strand=Plus/Minus Query 55843 gggCTGATGCCGATCCGCCCGGAGAACCGCGACCGCTATCCGAGTGACTGGAAACAGATC 55902 || |||||||| |||||||||||||||||||||||||| || | |||||| ||||| Sbjct 874 GGTCTGATGCCCATCCGCCCGGAGAACCGCGACCGCTACCCCAAGGACTGGCCCGAGATC 815 Query 55903 A-GCGAACGAATCCGCTTTGAGCGCGCCCAGGGCCGCTGTGAGTGCGAAGGCGAGTGCGG 55961 ||| || ||||| | | || | | | | | || ||||||| ||| ||| || Sbjct 814 TCGCGC-CGCATCCGGCTCGTCCG-GTCAATTACAG-TGCGAGTGCGTCGGCTGGTGTGG 758 Query 55962 CCGCGGTACACACACCG--GCCGCTGCCCAAACCGTCACGGACAGCCCGCATACGGGACC 56019 |||| |||||||||| |||||||| | || ||||| || | | ||| ||||| || Sbjct 757 CCGCA--ACACACACCGAGGCCGCTGCTCCAATCGTCAAGGGCTACGCGCTTACGGCACT 700 Query 56020 GGCAGCAAGGTCGTGCTCACCGTCGCCCACCTCAACCACATACCCGAGGACTGCGCCGAG 56079 ||||| |||||||| |||||||| ||||| || |||| |||||||||||| ||| Sbjct 699 GGCAGTCGCGTCGTGCTGACCGTCGCGCACCTGAATCACACCCCCGAGGACTGCCGCGAC 640 Query 56080 GACAACCTGCGTGCCATGTGCCAGGGCTGCCACCTGCACTACGACCGCGAGCACCACGCG 56139 || ||||| || || ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 639 GAGAACCTACGCGCGATGTGCCAGGGCTGCCACCTGCACTACGACCTGGAGCACCACGCG 580 Query 56140 CAGAC-CG-CTGCGGCCACCCGCCGCGCAGCCCTCGAAGCGCAGATGGATCCGATATTC 56196 ||||| || | |||| ||| | | ||| || || || || |||||||| ||||| ||| Sbjct 579 CAGACGCGCCAGCGGGCACGCACGGCG--GCTCTTGAGGCACAGATGGACCCGATGTTC 523 >seq45817 Length=532 Score = 89.7 bits (98), Expect = 2e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 45129 CATCGTGAACGAGTCGGGCATGTATGAGGTCGTCATCCGCTCCGACAAGCCAGAGGCTGT 45188 ||||||| ||| |||||||||| ||||||||||| ||||| |||||||| |||||||| Sbjct 109 CATCGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGT 50 Query 45189 CAAGTTCCGCCGCTGGATCACCGGCGAGGTGCTGCCCCAGATCCGCAAG 45237 | ||||||| || | | || || ||| |||||| ||||| ||| Sbjct 49 CGAGTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCGAAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 206508991910500