Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023712.1 Length=71341 Score E Sequences producing significant alignments: (Bits) Value seq49917 333 1e-86 seq50663 224 5e-54 seq38559 145 3e-30 >seq49917 Length=2087 Score = 333 bits (368), Expect = 1e-86 Identities = 723/1080 (67%), Gaps = 54/1080 (5%) Strand=Plus/Plus Query 34064 GGCGCGTGGGTGGGCACCGCGCAGCTGCTCGGCATCTACGACATCCTCAACTACATCGTC 34123 ||||||||| |||| | || ||| |||||| | |||||||| |||||| ||| Sbjct 181 GGCGCGTGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTG 240 Query 34124 ATCTGGCCGACGTGGTGGCTGCCGCTGGCCGCGCAGCCGTTCTCCCACGCCATCTACATC 34183 |||||||||||||||||||| || || ||||| ||||| | || ||||| |||| |||| Sbjct 241 ATCTGGCCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATC 300 Query 34184 GGCGGGCTGTGCACCTGCATCGAAGCGATGATCATGGAGAACTCGCTGCGGCTCCAGTC- 34242 | | ||| |||||| | || ||| || || | ||||||| ||||||| Sbjct 301 TGGGCGCTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCC 360 Query 34243 GGGCATCTGGGAGTTCGTCAACAACGTGGTGTCGCTC-----AACCCTGACATGCGCGCC 34297 ||| |||| ||||||||||||||| |||| ||| ||| ||||| || || Sbjct 361 GGGTGGCTGG-AGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCA 419 Query 34298 TGGATTGGCACGCTGCTTCAGTCG---AACGGCAACAT---------------CTTCGAC 34339 ||||| ||||| | | || | || || ||| ||||| | Sbjct 420 TGGATGGGCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGC 479 Query 34340 A---TGCTGAAGACGCCCATCTACGTGGTGCGCACCAACCCGCTGCTCGATACGAGTCCG 34396 | ||||| || |||| ||| ||| ||||||||||||| | || || || || Sbjct 480 AAGATGCTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCC 539 Query 34397 CTGGTCGCGCGCACGGTGCGGATGGAGACGTGCGGCGCGGTCATCGACGACATCACCCGC 34456 || ||| || || || ||||| || ||||| |||||||| | || |||||||| Sbjct 540 ATGTGCGCCAAGACCGTTCGCATGGAAACCTGCGGAACGGTCATCAAGGATGTCACCCGC 599 Query 34457 GCCTACGGGGTGACGGTGAGCGTGGACCTGTGGCTGCCGGGCGACGAGCAGCCGGACTAC 34516 |||||||| ||| || |||||||||||| ||||| ||| ||| |||||| | Sbjct 600 GCCTACGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAG 659 Query 34517 TGGACCAAGAACTTCGCGTCGATGCGGCTCACTCAGCCGACGTACGTGGTGACCGTCAAG 34576 ||| |||| | ||||| || || || |||||| | || | | Sbjct 660 TGGGCCAA--------CCTCGATTCG----------CCCACCTACGTGTTTTCCACCCGG 701 Query 34577 GACCGCTCGCGGATCACCGGCCCGACCGGCACGGTGATCGACTCGGCGGTGCGTCAGGTG 34636 |||||| || |||| | || || ||| || || ||| |||| | | |||| Sbjct 702 GACCGCCAGCAGATCTCGGGGCCCACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTG 761 Query 34637 GTCGACGTGGCCGGGTCGTTCTTTGGTGACCTGCT---GCCGATCATTCAGAAGGTGCCA 34693 ||||| | | ||| || || |||||| | | ||| |||| ||| |||| || Sbjct 762 ATCGACCTCGGCGGATCACTC---GGTGACATCTTCAAGCCAGTCATCCAGCAGGTACCC 818 Query 34694 GGTCGCGACGGGGTGTACATCTCCGAGCAGCTGGGCGTCGACTACGTGGGGCCGTGGGCA 34753 ||| ||||||||| | | || |||| || ||||| | || | ||| | || Sbjct 819 GGTATGAACGGGGTGTTCTACGCCCCCAAGCTCGGTGTCGATTTCGAGCAGCCCTACGC- 877 Query 34754 CTGC-TGATCGCGCCCGAGCCGGGGGAGAAGGGCAACGTCGTCACCTGCCGGATCAGCTT 34812 || | | |||| ||||| ||| ||| | |||| || ||| |||| ||| | Sbjct 878 CTACGTCGTCGCCCCCGAAGAGGGCGAGGACTCCAACATCATCAACTGCGAAATCGCCGA 937 Query 34813 CCACACGCCGAAAGGCTGGCAGCACATCATCGGCGGTCGCAGCCCGAAGTGGCTCAACGA 34872 |||||| || | |||||||| |||||||||||||| || || |||||| | ||||| Sbjct 938 CCACACCCCCGAGGGCTGGCAACACATCATCGGCGGCCGTTCTCCAAAGTGGTTGAACGA 997 Query 34873 CCTGATGAACGCGACATTCTCCTGGATGATCGACGCGCTCTCGATCCTGATCGGTTTCAC 34932 | | ||||| || || ||| | || ||| | |||| |||| || |||| ||| | Sbjct 998 CTTAATGAATGCCACCTTCGCAGGGTGGATGTATTCGCTGATGATCGTGGTCGGGTTCTC 1057 Query 34933 TGGAATCCCCAGCAACCTGCTGGAGGGGTTCATGAACAACACCCTGCTGGCGTTCCAGCT 34992 || ||||| | ||||| ||| ||| ||||||||| | | |||||||||||| | Sbjct 1058 CGGCATCCCGTCGGATCTGCTCTCGGGATTCCTGAACAACAGCTTCCTGGCGTTCCAGAT 1117 Query 34993 GGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCCTGGCATCGAGGTGTT 35052 ||| ||| ||| | ||| ||||||| ||||| | ||| || | |||||| ||| Sbjct 1118 GGTCCAGGTGTACCAGGTCCGCGACGAGGTGGGCCCTTTTCATCCGGCGATCGAGCGGTT 1177 Query 35053 CCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGGCTTCATCAACGCCAT 35112 | || |||| ||||||||||||||||||||||| || |||||| ||||||||||| || Sbjct 1178 CTACCCGACCGCCAGCGCCCCGTACAACATCGAAACCATGTTCGCGTTCATCAACGCGAT 1237 >seq50663 Length=1982 Score = 224 bits (248), Expect = 5e-54 Identities = 325/456 (71%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 34799 TGCCGGATCAGCTTCCACACGCCGAAAGGCTGGCAGCACATCATCGGCGGTCGCAGCCCG 34858 |||||||||| | ||| || || | || ||||||||||||||||| || || ||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 34859 AAGTGGCTCAACGACCTGATGAACGCGACATTCTCCTGGATGATCGACGCGCTCTCGATC 34918 |||||| | |||||| ||||||| || || ||| | ||| ||||||| |||| |||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 34919 CTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGGGTTCATGAACAACACCCT 34977 || |||| ||| | || ||||| | || ||||||| || ||| ||||||||| | | Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTT 1628 Query 34978 GCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCC 35037 ||||| |||||||| ||||| |||||| || ||| |||| |||||||| || ||||| Sbjct 1629 CCTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCC 1688 Query 35038 TGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGG 35097 | ||||| ||| | | || || ||||| ||||||||||| || || |||| Sbjct 1689 AGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGC 1748 Query 35098 CTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGCGATCGTGACGTTCCGCAA 35157 |||||||||||| | | ||||| | |||| | || || ||||||||||| Sbjct 1749 GTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAA 1808 Query 35158 TGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGGGCTGATCTCTCTTCTTTA 35217 ||| || ||| || | || | || || ||||||||||| |||| || | | || Sbjct 1809 TGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTA 1868 Query 35218 CATGGAGAGGACGCGAATCTTCACCGACTACATCGA 35253 | | | || || |||||||||||||||| Sbjct 1869 CCACGGCCGAACCAAGATGGTCACCGACTACATCGA 1904 >seq38559 Length=768 Score = 145 bits (160), Expect = 3e-30 Identities = 219/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 34901 ATCGACGCGCTCTCGATCCTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGG 34959 ||||| ||||| |||| || |||| ||| | || ||||| | || ||||||| || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGG 447 Query 34960 GTTCATGAACAACACCCTGCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGA 35019 ||| ||||||||| | | ||||| |||||||| ||||| |||||| || ||| |||| Sbjct 448 CTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGA 507 Query 35020 GGTCGGCCCGTATCACCCTGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAA 35079 |||||||| || ||||| | ||||| ||| | | || || ||||| ||||| Sbjct 508 AGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAA 567 Query 35080 CATCGAGACGGTGTTCGGCTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGC 35139 |||||| || || |||| |||||||||||| | | ||||| | |||| | || Sbjct 568 CATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGC 627 Query 35140 GATCGTGACGTTCCGCAATGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGG 35199 || |||||||||||||| || ||| || | || | || || ||||||||||| Sbjct 628 ACAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGG 687 Query 35200 GCTGATCTC 35208 |||| || Sbjct 688 ATTGATGTC 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228025275516500