Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_023862.1 Length=52136 Score E Sequences producing significant alignments: (Bits) Value seq46163 199 1e-46 >seq46163 Length=1271 Score = 199 bits (220), Expect = 1e-46 Identities = 329/474 (69%), Gaps = 22/474 (5%) Strand=Plus/Plus Query 5431 GAGAAGGGGTGGCGGTGCTGCAACAGGGACGAGTGCGACATCGTCCGAATCCCCGGCCTG 5490 ||||| || ||||| |||||| ||||||| ||||||||||| || ||| || ||| Sbjct 763 GAGAACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTG 822 Query 5491 TATCTAACCGACACAGCACCCATCCGTAAGGGGGCTCCGCTAACCATTCTCGGGGCGTGG 5550 || || ||| || ||||| | || ||||| || ||||| ||||| ||||| || ||| Sbjct 823 TACCTCGTCGATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGG 882 Query 5551 CTGTACTGGTACGACCGCAACGTCGAGGAGATCGTCACCCCGATCTGGGGCTGGTCCCTT 5610 ||||||||||| |||||||||||||| |||||| | |||| | ||||| ||||| Sbjct 883 CTGTACTGGTATGACCGCAACGTCGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCC 942 Query 5611 GATAACGACGTACTAGGGCAGCCGGGGAAGAACAACGGGTCTAACCACCTGTCTGGGGTA 5670 |||||| || | ||| |||| ||| |||||| | || Sbjct 943 ACTAACGATGTTC-------GCC-------AACA------GTAATCACCTGGCAGGCACC 982 Query 5671 GCTGTGGACGTCAACGCGCCCAAGTACCCCTGGGGCACGTACCGGATGTCTGCGGACAAG 5730 ||||| ||||| | || ||||||||||||||| |||| |||| ||| | || | Sbjct 983 GCTGTTGACGTGATGGCACCCAAGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACG 1042 Query 5731 ATTGCCAAGGTCGAGGAAGGACTTCG-GCTGTTCGAAGGGACAGTCTTCTGGGGACGGCG 5789 ||||||||| | |||| | | | ||||||||| || | || |||||||| || Sbjct 1043 CAGGCCAAGGTC-CGCAAGGGCCTGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGA 1101 Query 5790 CTGGTCAAAGCCCGACGAGATGCACTACGACCTCTCGTACCCCGAAGGCGACCCTCGAAA 5849 |||||| |||||||||||||||||| | | | | ||||| |||||| || || Sbjct 1102 CTGGTCGCGCCCCGACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCGACAAGCGCAA 1161 Query 5850 CGAGGCCTTCGCGAAGAAGCTCCTGGATGGGTACCTCGGGATTTACAAGCCCGC 5903 || || ||||| ||||| | | || |||||||| || ||| |||||| Sbjct 1162 TGACGCGTTCGCCGCCAAGCTGCGCGCCGGATACCTCGGCATCTACGCGCCCGC 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166613129007000