Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_024135.1 Length=42392 Score E Sequences producing significant alignments: (Bits) Value seq39761 333 7e-87 >seq39761 Length=1115 Score = 333 bits (368), Expect = 7e-87 Identities = 660/963 (69%), Gaps = 51/963 (5%) Strand=Plus/Plus Query 33259 CGAGCTGCGGCCCGCCGACGTCGAACGCGGCCGGCGACTCAACCGCAAGGCGATCGACCT 33318 |||||| ||||| ||| |||| | ||| ||||| | |||||||||||| |||||||| Sbjct 8 CGAGCTCAAGCCCGAGGACATCGACCTCGGTCGGCGCCGCAACCGCAAGGCCATCGACCT 67 Query 33319 ATACGCCAAATGCGAATCCGCCAACGAG---TGGCCGAGCTACGACCCCGGCATCCACAC 33375 |||||| |||||| |||||| || ||||| |||||| | | | | ||| | Sbjct 68 GTACGCCCAATGCGT---CGCCAATGACCACTGGCCCGGCTACGGCGACCACGTGCACTC 124 Query 33376 CGTCAACTTTCCGAGCTACGCCCAATACCGAGAGGAATCCGAACTG--TCA-TGAGCACC 33432 || | || || |||||| |||| | ||| ||||| ||| ||| | | Sbjct 125 GGTATCACTCCCCAGTTACGCCACCTACCAGCAAGAAGGAGAACTCGATCAGTGACCGTC 184 Query 33433 ACCGCGAACGAGATCCAGCGCTACAACCCGGCCGGCGCGATGGNNNNNNNNNNGGCCGGC 33492 ||| | || || ||| || ||||| | |||| || | | Sbjct 185 ACCCCCTACCAGC-CCA----TATCACCCGCACCGCGC-------------ACAGCAGTC 226 Query 33493 TCGCAGGCGACCACGATCGAGCAGTCCCGCGCGATCGCCGAAGTCCAGGCCGCCGTCGTC 33552 ||||| ||| | |||| |||||||| || ||||||| ||||| |||||||| || Sbjct 227 AGCCAGGCCACCTCAGTCGAACAGTCCCGTGCCGTCGCCGAGGTCCAATCCGCCGTCATC 286 Query 33553 GTCGCGCAGAACTGCCCGCGTGACATGGCCCGCGCTGAGCATGAAATGCGCGACAGCTGC 33612 || || ||| | |||||| |||||| || || || || |||||||| | ||| Sbjct 287 GTGGCCCAGCAGATCCCGCGCGACATGCAGCGGGCCGAAGCGGAGATGCGCGATACGTGC 346 Query 33613 GGCCGTCTCGCGATGGCATCCCGCGCGTTCTACCAGGTGACCAACCGGGGGACCGGCCCG 33672 || ||||||||| | || |||||||| ||| | ||||| || | |||| | Sbjct 347 AATCGATCCGCGATGGCGAAACAGGCCTTCTACCAAGTGCCGAACCGAGGCAACGGCGCA 406 Query 33673 TCGGTTCATCTCATGCGCGAGCTGGCCCGCATTTGGGGGAACGTCCAGTACGGCGTGACC 33732 ||||| || ||||||||||| || || || | ||||| ||||| ||||||||||| | | Sbjct 407 TCGGTGCACCTCATGCGCGAACTCGCGCGAGTCTGGGGCAACGTGCAGTACGGCGTCAAC 466 Query 33733 GAGCTGGCCCGCAACGACGACAAAGGGGAGTCCGAAGTCCAGGCGTGGGCATGGGACGTC 33792 |||||| |||| ||||| | || || ||||| || ||||||||||| ||||| || Sbjct 467 GAGCTGCACCGCGACGACTCCCGGGGCGAATCCGAGGTTCAGGCGTGGGCGTGGGATGTG 526 Query 33793 CAGACCAACACGCGGTCGACGCGTACGTTCATTGTTCCGCACCAGAAGATG-GTGAAGGT 33851 ||||||||||| || || ||||| || ||||| || || | ||| | | || Sbjct 527 CAGACCAACACCCGCTCTACGCGCACCTTCATCGTCCCCC--------ATGCCCGCATGT 578 Query 33852 AAACGGCCAGCGCACCCGCCGCGACCTGGACGACCTGCAGGACGTCTACCTGAACAACCA 33911 || || ||| ||||| || || |||||| ||| || || ||||||| | Sbjct 579 CAAAGG--GGCG---CCGCCAAGAACTCACCGACCTCGGTGACATC-AC--GAACAACAA 630 Query 33912 GAACA--TCGG-CGCACGCGCTGTCCGCGAGTGCATTTCGACCGTTCTGCCGACGTGGTT 33968 |||| ||| ||| ||||||||||| |||||||| || | |||| | |||||| Sbjct 631 CAACAATGCGGCCGCTCGCGCTGTCCGTGAGTGCATCAACGCCATCTTGCCCAAGTGGTT 690 Query 33969 CACCGAGACTGCGCAGGACATCTGCCGTGACACGCTGGAGAACGGCGAAGGTGTTCCGCT 34028 |||||| | || |||||||||||| | |||||||||||||||||| || || || || Sbjct 691 CACCGAAGCGGCACAGGACATCTGCAAGGCCACGCTGGAGAACGGCGAGGGCGTGCC-CT 749 Query 34029 CGGCC-AGCGCATCGAGAACATGGT-GAACGCGTTCGCGGCGATCGACATCACGGCCGCG 34086 | || ||||||||||| ||||| | | | ||||| || |||| | || | ||| Sbjct 750 TGCCCAAGCGCATCGAGGACATGATCGCCGGATTTCGC-GCCATCGGCGTCTCCCAGGCG 808 Query 34087 CAGCTCGAAGTGAAGGTCGGCAAGAAGGTAGGCCAGTTCACGGCCGCCGACGTCGCTCAG 34146 || | || ||| |||||||||| ||| | || | ||| ||||| ||| Sbjct 809 CAATTGGAGACCAAGATCGGCAAGAAACGCGGCGCCTGGGATGCGGGCGATGTCGCGCAG 868 Query 34147 CTCGGCATCGCATATACCTCGATCACACGCGAAGGGTTCGACAAGGCCGAGCTGTTCCCG 34206 | |||||| | || ||||||||||| ||||| || | |||||| |||||| |||||||| Sbjct 869 ATGGGCATCACCTACACCTCGATCACCCGCGACGGCTACGACAAAGCCGAGATGTTCCCG 928 Query 34207 CCG 34209 ||| Sbjct 929 CCG 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135451120311000