Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq133 105 1e-17 >seq133 Length=10473765 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| ||| | |||||||||| | |||| ||||| | || || || || ||||| Sbjct 3213923 GATAGCTGCAGCGCTGTGGTGGTACTTTGTATCGAAAGGTGTTGAGTATTTGGACACAGT 3213864 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||| || || ||||| || || || ||| || || |||||||| ||||| | Sbjct 3213863 GTTTTTTATCCTAAGGAAGAAAAACAACCAAGTTTCTTTCCTTCACGTATACCATCACTG 3213804 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||| |||||||| || | ||| |||| ||||||||| | ||||| || || Sbjct 3213803 TACCATGTTTACATTGTGGTGGATAGGAATTAAATGGGTCGCAGGGGGACA 3213753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902838098520000